Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju06g0428 ATGAATAACTGCGTAGCTGTATCATCATCAAATAATTCTTATGCTTCCCGAAAGGCTCCCATATTTAGGAGGTCCCAAACTGAAAAATCTTTTAGTGATGAGTTCGAACACATGGCTGGATCTGAAAAGATGGAGAAAGGGAAAAATATATGCCTTAAATTTCCTTCTAAATCATCTTCCAGTGGCAATGGGGGTGTTACTGTTTTTGATTTGACTGAAGAAAATGGACAGCCCCAAAGGCTCAAACCATTTTTCTCACATCATGGATTGAAGGATAATGCAATTGAAACCAAGAAAGACGGGAAAGCCAGTGTTGGGAACTCTCCTATATCTTGCATTCCTGATTCTTCAAATATACCTAGCAATGCCTTTCGAGGGAAGTCTAAAATAGATGATAAACAACATCTATGCTCGAATATAACTGTTGATCGGGGAAAGAGTATTGATCTATCGAGTGATTCTCAACAAAAAACTGAAAAGCAGGTGTCTTTGTCTCCTCACCTTATAACTGCCCCAAGATTCAGAGGCCAGAAGAGATTGGTGCGAAATGGCTGCATCTCTCCTTCTAATATTGCAGCTAGAGCAAAACAATCAGCTGAACAGAATGATGTTGAACAGAGACACGCGGAGGAAGATGTTTCTAGCAATACAACGCCTCATATGAGTATCAATGATATAGTTGCTGAAGAGAGAAGCAGTACGAAGGGAAAAGAATTGTTTATCCATCCTTCAAGTATGCATGATGCCAGAACTATCAAGACAGCTAACAGCAGCGCTATAGATAATTATGAAGAGATCAATGGGACCAGTAATGCTATCAGAAATTCACATGAAAGCTTTGGGGGATCAGATGGTTTGACAATAACACATAACAGCAGAACTACTCATTGGCCCCTGCATGATGTAACTGGGCATCGTTCAAGGAGAGGGGAAGATTCTGAAAGATTTGTGAGCACACAATGTAGAAACAGAGTGGGTAGAAGAGACACTGGGAGCAGTCAAAACACCATGGATGTAAGATATCCTCTAGAAACTCATGCAACTTCTCTGATCATTCCTGATGCTGAAGAGTCAACTAGACCTTGTAATACAGCAGACAAACTGACTAAAAGGCAAAGGAAGAATGGGTCAACTTCTAGAAATCTTATTCCAGAGATTATGATTCTTGATTCACCCGGGGAATCGTCAAATTTAAGCTCATCTAGAAGATCTGAAGTTATTGAGCCATTACCTGGAACAACATACACCAACAGAGCATCCCATGATTCCGATGACATGAATCCTAATGATTCGGATACTCGGGCTAGACAGGTAGAAGCAGATGAGATATTGGCCCGTGAACTTCAAGAACAACTATATCATGAGGATTCTTTTGATGGGGGAGAGCATATTGATGAACATTTAGTGTGGGCATTGCAACATGAGGAGGAACTTCTGCATACATCTAATGATACTCACCATACATCACATGCTAGATGGTTGTCAAGGGCAGCCTCAAATAGACAGCCTCGTTCCCGGTCTCATCAAAGTCCTACAAATAGAAGGAGGGCTGTGCCTCATGCCTCTCTCTCTAATAGAGTGTCACAGTTGAGGAGTCGCTATTTAAGGTCTTCAACACCTGCCATCCCAACCAGAGGAAGGCGTCTTCAGTTTCCTGTGGATATGGACTTTGACATGAGACTTGATATATTGGAAGCATTGGAGGATGCAGCTGGGGATATTGGTGACATGGAAATTGCTGAAGACATGTTTCAAGCTCATCGAGACTTCAATGAAAACGATTATGAAATGTTATTGGCCCTCGATGAGAACAATCACCAACATGCTGGTGCGTCTGTCCATCAGATCAATAGTTTGCCGCAGTCCACTATACAGACTGACACCTGCCAAGAGGCCTGCGCCGTGTGTCTTGAGATTCCAGTTATGGGAGAAACCATTCGCCATCTTCCTTGTTTGCACAAATTTCACAAAGATTGTATCGATCCTTGGCTTCGTAGAAGGACCTCGTGCCCAGTGTGCAAGTCATCTATCACCTAA 2037 0.4222 MNNCVAVSSSNNSYASRKAPIFRRSQTEKSFSDEFEHMAGSEKMEKGKNICLKFPSKSSSSGNGGVTVFDLTEENGQPQRLKPFFSHHGLKDNAIETKKDGKASVGNSPISCIPDSSNIPSNAFRGKSKIDDKQHLCSNITVDRGKSIDLSSDSQQKTEKQVSLSPHLITAPRFRGQKRLVRNGCISPSNIAARAKQSAEQNDVEQRHAEEDVSSNTTPHMSINDIVAEERSSTKGKELFIHPSSMHDARTIKTANSSAIDNYEEINGTSNAIRNSHESFGGSDGLTITHNSRTTHWPLHDVTGHRSRRGEDSERFVSTQCRNRVGRRDTGSSQNTMDVRYPLETHATSLIIPDAEESTRPCNTADKLTKRQRKNGSTSRNLIPEIMILDSPGESSNLSSSRRSEVIEPLPGTTYTNRASHDSDDMNPNDSDTRARQVEADEILARELQEQLYHEDSFDGGEHIDEHLVWALQHEEELLHTSNDTHHTSHARWLSRAASNRQPRSRSHQSPTNRRRAVPHASLSNRVSQLRSRYLRSSTPAIPTRGRRLQFPVDMDFDMRLDILEALEDAAGDIGDMEIAEDMFQAHRDFNENDYEMLLALDENNHQHAGASVHQINSLPQSTIQTDTCQEACAVCLEIPVMGETIRHLPCLHKFHKDCIDPWLRRRTSCPVCKSSIT 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju06g0428 678 SUPERFAMILY RING/U-box 632 677 - -
Alju06g0428 678 MobiDBLite consensus disorder prediction 297 317 - -
Alju06g0428 678 MobiDBLite consensus disorder prediction 353 434 - -
Alju06g0428 678 SMART ring_2 633 673 IPR001841 -
Alju06g0428 678 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 599 678 IPR013083 -
Alju06g0428 678 Pfam Ring finger domain 632 674 IPR001841 -
Alju06g0428 678 CDD RING-H2_PA-TM-RING 633 674 - -
Alju06g0428 678 MobiDBLite consensus disorder prediction 299 317 - -
Alju06g0428 678 PANTHER SI:CH211-59O9.10 246 678 - -
Alju06g0428 678 MobiDBLite consensus disorder prediction 482 523 - -
Alju06g0428 678 MobiDBLite consensus disorder prediction 200 214 - -
Alju06g0428 678 FunFam RING/U-box superfamily protein 598 678 - -
Alju06g0428 678 MobiDBLite consensus disorder prediction 492 507 - -
Alju06g0428 678 ProSiteProfiles Zinc finger RING-type profile. 633 674 IPR001841 -
Alju06g0428 678 MobiDBLite consensus disorder prediction 392 422 - -
Alju06g0428 678 MobiDBLite consensus disorder prediction 192 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju06g0428 Alju-ChrAlju06 3525099 3530781 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju06g0428 431 678 C3H Transcription Factor Family AT1G04790 50.397 9.51e-69 234