Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju06g0348 ATGAGCCCGCGCAGGTTAGCAAGGAATTCCCGAAATACCCCTCTGATCTGTCATCTATTCAAATCCGAACTTCCGTTTTGGATCAGACTTTGTCTCTCTCTGAATCCATTTCCAGCCCACACCCTGTCTGCGGGAGACCCCTCGCCTTTCCTTTCTATGGAGCTTCATAAGCGCCAAGATCAGAGCCTCCCTGAGAGGAAAGGCCAGAAGCGGAAGCTGGAGGAAGATTTCGAAGACGAGCGGGAGATCTCGGCGCCTCCTACCGGCGACGCCCGAGACGCCCTTCTCGCTGAGGTCACAGCGCAGGTTGAAATCCTGGAATGTAATTTTTCATGGCGTGAAGCCGATCGCGCCGCGGCTAAGCGTGCCGCTCACGTTCTCGCCGAGCTTGCTAAGAATGAGGAAGTAGTCAACATTATTGTTGAAGGAGGCGCTATTCCATCTTTGGTTAAGCATCTTCAAGCGCCGCCTTCGATTGAAGGCGATCGTGGTCCAAAGCCATTCGAGCACGAGGTCGAGAAAGGGAGTGCTTTCGCTTTAGGACTTCTTGCCGTCAAGCCAGAACATCAACAGCTAATTGTTGACAATGGTGCTTTAAAACATCTTGTTGATCTGTTAAAGAGACATAAGCATTGCTCTACTTCTCGTGCTGTGAATAGTGTCATTCGCAGGGCTGCAGATGCAATCACTAATCTTGCTCATGAGAACAGCAGCATTAAAACACGTGTCAGGATGGAAGGTGGAATTCCACCACTCGTTGAATTGCTTGAATTTACTGACACAAAGGTGCAAAGAGCAGCTGCTGGCGCACTGCGAACTCTGGCATTTAAAAATGATGAAAATAAAAATCAGATTGTTGAATGCAATGCTCTTCCAACTCTAATTTTAATGCTCCGTTCTGAAGATGCTGCTATTCATTATGAAGCGGTTGGTGTGATAGGAAATCTAGTACACTCTTCACCTAATATAAAGAAAGAAGTTCTTCTTGCTGGGGCTTTACAACCTGTTATTGGATTACTTAGCTCCCCCTGCTCTGAGAGCCAAAGGGAAGCTGCCTTGTTACTTGGACAGTTTGCAGCAACTGATTCAGATTGTAAGGTTCACATTGTTCAGAGAGGTGCTGTCGGACCTCTGATAGAGATGCTCCAGTCCCCTGATCTACAGCTCAGAGAAATGTCTGCCTTTGCTTTGGGGAGACTCGCACAGGACACTCATAACCAAGCTGGTATAGCACACAATGGTGGCTTAGCGCCATTACTCAAGCTCCTTGACTCAAAAAATGGGTCTTTGCAGCATAATGCTGCTTTTGCTCTTTATGGCCTCGCTGATAATGAGGATAATGTTTCTGATTTCATTAAGGTAGGCGGTGTTCAGAGACTTCAGGATGGAGAGTTTATTGTTCAAGCAACAAAAGATTGTGTTGCAAAGACATTGAAAAGATTAGAGGAGAAGATTCATGGCCGTGTTCTGAACCATTTATTATATCTTATGCGAGTTTCGGAGAAACCAATCCAAAGACGAGTTGCTTTGGCTCTTGCTCATCTTTGTTCTGCTGATGATCAGAGAACCATATTCATTGATAACAATGGTTTGGAATTTCTTATTGGGCTCCTTGGCTCTACTAGTCCTAAACAGCAACTTGATGGTGCTGTTGCTTTATGCAAGTTGGCCAACAAAGCCACAACTCTATCACCAATAGATGCTGCTCCTCCTTCCCCAACGCCCCAGGTTTATTTGGGAGAACAGTATGTGAACAATGCTACATTGTCTGACGTAACATTTTTGGTTGAAGGGAATCGATTTTATGCTCACAGAATATGCCTACTTGCATCTTCAGATGCATTTCGTGCCATGTTTGATGGTGGTTATAGGGAGAAGGATGCAAGAGACATAGAGATTCCAAATATTAGATGGGAAGTTTTTGAGTTGATGATGAGATTCATATATACTGGATCTGTTGATGTTACTCTTGATATTGCCCAAGATCTCCTCAGTGCAGCTGATCAGTATCTCTTAGAAGGACTTAAGAGACATTGTGAGTACACGATAGCACAGGATATATCACTGGAGAATGTTTCTAGTATGTATGAACTCTCAGAAGCCTTCAATGCAATCTCATTGAGGCACACATGCATCCTATTTATCATGGAGCACTTTGATAAATTGAGTGCCAGGCCAGGGCACTCCTGTCTGGTTCAGCGTATAATACCAGAGATTCGCAACTACTTTGCCAAAGCTCTCACAAAAGCTAACTCCCGTGACATCCGGCTGTAG 2274 0.4503 MSPRRLARNSRNTPLICHLFKSELPFWIRLCLSLNPFPAHTLSAGDPSPFLSMELHKRQDQSLPERKGQKRKLEEDFEDEREISAPPTGDARDALLAEVTAQVEILECNFSWREADRAAAKRAAHVLAELAKNEEVVNIIVEGGAIPSLVKHLQAPPSIEGDRGPKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALKHLVDLLKRHKHCSTSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDAAIHYEAVGVIGNLVHSSPNIKKEVLLAGALQPVIGLLSSPCSESQREAALLLGQFAATDSDCKVHIVQRGAVGPLIEMLQSPDLQLREMSAFALGRLAQDTHNQAGIAHNGGLAPLLKLLDSKNGSLQHNAAFALYGLADNEDNVSDFIKVGGVQRLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVSEKPIQRRVALALAHLCSADDQRTIFIDNNGLEFLIGLLGSTSPKQQLDGAVALCKLANKATTLSPIDAAPPSPTPQVYLGEQYVNNATLSDVTFLVEGNRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDIAQDLLSAADQYLLEGLKRHCEYTIAQDISLENVSSMYELSEAFNAISLRHTCILFIMEHFDKLSARPGHSCLVQRIIPEIRNYFAKALTKANSRDIRL 757
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju06g0348 757 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 373 415 IPR000225 GO:0005515
Alju06g0348 757 SMART BTB_4 590 687 IPR000210 GO:0005515
Alju06g0348 757 Pfam Armadillo/beta-catenin-like repeat 278 317 IPR000225 GO:0005515
Alju06g0348 757 Pfam Armadillo/beta-catenin-like repeat 243 275 IPR000225 GO:0005515
Alju06g0348 757 Pfam Armadillo/beta-catenin-like repeat 187 217 IPR000225 GO:0005515
Alju06g0348 757 MobiDBLite consensus disorder prediction 57 88 - -
Alju06g0348 757 MobiDBLite consensus disorder prediction 58 87 - -
Alju06g0348 757 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 414 456 IPR000225 GO:0005515
Alju06g0348 757 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 197 247 IPR000225 GO:0005515
Alju06g0348 757 SUPERFAMILY ARM repeat 116 461 IPR016024 -
Alju06g0348 757 Gene3D Potassium Channel Kv1.1; Chain A 571 719 IPR011333 -
Alju06g0348 757 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 144 198 IPR000225 GO:0005515
Alju06g0348 757 Gene3D - 467 566 IPR011989 -
Alju06g0348 757 FunFam Armadillo/beta-catenin repeat family protein 581 725 - -
Alju06g0348 757 SUPERFAMILY POZ domain 582 684 IPR011333 -
Alju06g0348 757 SUPERFAMILY ARM repeat 488 559 IPR016024 -
Alju06g0348 757 Gene3D - 99 466 IPR011989 -
Alju06g0348 757 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 289 331 IPR000225 GO:0005515
Alju06g0348 757 ProSiteProfiles BTB domain profile. 590 657 IPR000210 GO:0005515
Alju06g0348 757 Pfam BTB/POZ domain 583 685 IPR000210 GO:0005515
Alju06g0348 757 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 247 282 IPR000225 GO:0005515
Alju06g0348 757 SMART arm_5 320 360 IPR000225 GO:0005515
Alju06g0348 757 SMART arm_5 186 234 IPR000225 GO:0005515
Alju06g0348 757 SMART arm_5 403 443 IPR000225 GO:0005515
Alju06g0348 757 SMART arm_5 278 318 IPR000225 GO:0005515
Alju06g0348 757 SMART arm_5 236 276 IPR000225 GO:0005515
Alju06g0348 757 SMART arm_5 518 558 IPR000225 GO:0005515
Alju06g0348 757 SMART arm_5 362 402 IPR000225 GO:0005515
Alju06g0348 757 SMART arm_5 133 185 IPR000225 GO:0005515
Alju06g0348 757 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 53 751 IPR044282 -
Alju06g0348 757 CDD BTB_POZ_ARIA_plant 577 692 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju06g0348 Alju-ChrAlju06 2929263 2935512 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju06g0348 231 453 U-box Gene Family AT1G23030 27.753 5.15e-13 70.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Alju06g0348 BTB 7.3e-26 CL0033