Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju06g0342 ATGGCTCAGCTGCAGAGCCAAGAGCAGCAACAGCCACCTATTGATCATGCCCAGAAGACCAAGACTCTCATTTGTGCTCTCAACCTTGTCTCCCGTAACCTCCCTCTGCCTCCTGATCTTTTCAACACCGTTTCTTCCATCTATCACGGCGCTGAAGATGCTTCCAGGGATGACCATGAACGCGAGGTCCCTGATGGGAGTGAGGATGGAGCCGGATCTGAGGAGAAACAGGTGGATGCCCATGCTGACAAGGTTTTGGATAATACAGGAAATTCTAGAGAAGATTTGTTGACGGATCTTGAAGATGCACTATTGAAGCAACGACCAAGTTGTGTGTCAGGTTACAAATTGAAGGAAGAAAGGGAAAGCCGTTATAAAAGTCAGATTCAGCATCGGTTAAATGAACTAGAAGGATTGCCTTCAAGTAGGGGAGAGGACTTGCAGACAAAGTGCCTGCTTGAACTGTATGGGCTGAAGCTAGCAGAGTTGCAGAGGAAGGTTCGATCTGATGTGAGTGCTGAATACTGGCTCAATGTTAAATGTGCATATCCTGACAGGCAGTTGTTTGATTGGGGAATGATGCGGTTGCATCGTCCTATGTATGGTGTTGGAGATCCCTTTGCCATGGATGCTGATGATCAGTTAAGGAAGAAAAGGGATGCTGAGAGATTATCAAAATTAGAAGAGGAGGAAAAGAATCAAATAGAGACCAGAAGAAGAAAATTTTTTGCGGAAATACTTAATGCTGTCCGCGAGTTCCAATTACAAATTCAAGCTTCTTTAAAACGAAGAAAACAGAGAAATGATGGCGTCCAGGCATGGCATGGAAGGCAAAGACAACGTGCTACACGGGCTGAGAAATTGAGGTTTCAAGCCTTAAAGGCTGATGATCAAGAAGCTTATATGAGAATGGTCAAAGAGAGTAAGAATGAAAGGTTGACTTTGCTTCTTCAAGAAACAAATAAGTTGCTTGTGAATTTGGGAGCAGCTGTTCAACGTCAAAGGGACTCAAAACAAACAGATGGCATTGAACCTTTAGAAGACTCAGAAGCTGAACTGCCAGAGTCAGATGGTTCAAAGAATGGAATATCCAAGGAATCACCTACTGAGGAGGATGCCGATATGGTAGATTCTGATCATAATGGTGATACTAGTGATTTACTTGAAGGTCAACGGCAATACAACTCTGCCATACATTCAATTCAAGAGAAGGTAACTGAGCAACCTTCTAGTCTTCAAGGTGGAGAGTTAAGACCATATCAGTTAGAAGGGCTTCAGTGGATGCTTTCACTGTTCAATAACAACCTAAATGGAATTTTGGCAGACGAAATGGGTCTGGGGAAGACAATACAAACAATTTCTTTGATAGCATATCTTATGGAGAACAAGGGTGTGACTGGTCCCCACTTGATTGTGGCTCCAAAGGCTGTTCTGCCAAATTGGATCAGTGAATTCTCGACATGGGTTCCAAGCATTACAACTGTCCTTTATGATGGACGGCTGGATGAGCGAAAAGCAATGAAGGAGGAATTGTCAGGAGAGGGGAAGTTTAATGTTTTGATAACACACTATGATCTTATAATGAGAGATAAGGCGTTTCTCAAGAAAATTCATTGGTACTACTTGATTGTGGATGAAGGGCATCGGTTGAAGAATCATGAGTGTGCTCTAGCAAGAACTCTGGACTCTGGCTATAACATCCAACGTAGACTCCTGCTGACTGGAACCCCTATTCAGAACAGTTTGCAGGAATTGTGGTCCCTTCTTAATTTTCTCCTTCCAAACATTTTTAACTCGGTTCAAAATTTTGAGGACTGGTTTAATGCTCCCTTTGCGGACCGAGTTGATGTCTCTCTAACAGACGAAGAACAGCTATTGATCATTCGTCGTCTTCATCAAGTAATAAGACCCTTCATATTAAGAAGGAAGAAAGATGAGGTGGAAAAATATCTTCCGGGGAAATCTCAGGTCATACTCAAATGTGATATGTCGTCATGGCAGAAAGTATATTATCAACAAGTTACTGACTTGGGCAGAGTTGGCTTGGACAATGGCACCGGGAAGTCCAAGAGTCTACAGAATTTAACAATGCAACTCAGAAAGTGTTGTAACCATCCCTACCTCTTTGTGGGAGAACATAATATGTGGAACAAGGATGAGATTGTCCGAGCATCAGGGAAGTTTGAACTTCTTGACCGTTTGCTACCAAAACTTCGTAGAACTGGGCACAGAGTCCTTATGTTCTCACAAATGACTCGTCTCATGGATATTCTTGAAATTTATCTGCGGCTTCATGATTTCAAGTTTCTTAGACTTGATGGCTCAACAAAAACTGAGGAAAGAGGGACTCTACTGCGACAGTTCAATGCTCCTGACTCTCCATACTTTATGTTTCTTTTGAGCACCCGTGCTGGAGGCCTTGGTCTAAACTTGCAAACAGCAGATACTGTGATAATTTTTGATAGTGATTGGAACCCTCAAATGGATCAACAAGCTGAGGATCGAGCTCATCGCATTGGACAAAAGAAAGAAGTCAGGGTTTTCGTGTTGGTTAGTGTGGGATCAATTGAAGAGGTGATTTTGGAGCGTGCAAAACAAAAGATGGGCATTGATGCTAAAGTTATCCAGGCAGGACTTTTTAACACAACTTCAACAGCTCAGGACAGGAGAGAAATGTTGGAGGAGATTATGCGCAGAGGCACAAGCTCACTTGGGACTGATGTACCAAGTGAGAGAGAAATCAACCGCCTTGCAGCTCGATCAGATGAAGAATTTTGGTTGTTTGAGAGAATGGATGAAGAGAGAAGGCAAAAGGAGAACTACAGATCTCGTCTCATGGAAGAACATGAAGTGCCAGATTGGGTATACGCTGCAACAGTTAACAAGGATGACAAGGTCAAAGGTTTTGATTTTGGTAGTGTTACTGGTAAGCGGAAAAGAAAAGAAGTGGTATATGCCGATACATTAAGTGATCTCCAATGGATGAAAGCTGTGGAGAATGGGGAAGATGTGTCAAGGCTTTCAGTTAAAGGGAGAAGAAGAGACCACCTACCATCGGACAGCAACACAACTGCCGGTGATAATGTTGGGGTGGAAGAAAGTTTTTCTGAAATACAAAATGAAAGCTTCTCCATGGGGAAAGAGAGATCAAGTGAAGACTCTTTCCATGGGACCCCTGGTCCTGCCCCAAAAAGACTCGGGCAGGAAGGAATAACCACCCCAAAACATGAATACGAGGGCTTCAGAGGAAGTGGTTTGTTGAATGAGCACATGTTTTCATGGAATACCATTAGAAAGAAAAGATCAAGCAGTCTCACTCAGAGCTCGTCGTTTTCTGATTCTAGAGGGCAGAGTTCTAATGGAAGAGGAAATTGGAGCTGA 3381 0.4306 MAQLQSQEQQQPPIDHAQKTKTLICALNLVSRNLPLPPDLFNTVSSIYHGAEDASRDDHEREVPDGSEDGAGSEEKQVDAHADKVLDNTGNSREDLLTDLEDALLKQRPSCVSGYKLKEERESRYKSQIQHRLNELEGLPSSRGEDLQTKCLLELYGLKLAELQRKVRSDVSAEYWLNVKCAYPDRQLFDWGMMRLHRPMYGVGDPFAMDADDQLRKKRDAERLSKLEEEEKNQIETRRRKFFAEILNAVREFQLQIQASLKRRKQRNDGVQAWHGRQRQRATRAEKLRFQALKADDQEAYMRMVKESKNERLTLLLQETNKLLVNLGAAVQRQRDSKQTDGIEPLEDSEAELPESDGSKNGISKESPTEEDADMVDSDHNGDTSDLLEGQRQYNSAIHSIQEKVTEQPSSLQGGELRPYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTISLIAYLMENKGVTGPHLIVAPKAVLPNWISEFSTWVPSITTVLYDGRLDERKAMKEELSGEGKFNVLITHYDLIMRDKAFLKKIHWYYLIVDEGHRLKNHECALARTLDSGYNIQRRLLLTGTPIQNSLQELWSLLNFLLPNIFNSVQNFEDWFNAPFADRVDVSLTDEEQLLIIRRLHQVIRPFILRRKKDEVEKYLPGKSQVILKCDMSSWQKVYYQQVTDLGRVGLDNGTGKSKSLQNLTMQLRKCCNHPYLFVGEHNMWNKDEIVRASGKFELLDRLLPKLRRTGHRVLMFSQMTRLMDILEIYLRLHDFKFLRLDGSTKTEERGTLLRQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLEEIMRRGTSSLGTDVPSEREINRLAARSDEEFWLFERMDEERRQKENYRSRLMEEHEVPDWVYAATVNKDDKVKGFDFGSVTGKRKRKEVVYADTLSDLQWMKAVENGEDVSRLSVKGRRRDHLPSDSNTTAGDNVGVEESFSEIQNESFSMGKERSSEDSFHGTPGPAPKRLGQEGITTPKHEYEGFRGSGLLNEHMFSWNTIRKKRSSSLTQSSSFSDSRGQSSNGRGNWS 1126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju06g0342 1126 Pfam SNF2-related domain 420 708 IPR000330 GO:0005524|GO:0140658
Alju06g0342 1126 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 644 894 IPR027417 -
Alju06g0342 1126 SMART helicmild6 756 840 IPR001650 -
Alju06g0342 1126 PANTHER SNF2/RAD54 HELICASE FAMILY 157 1018 - -
Alju06g0342 1126 MobiDBLite consensus disorder prediction 364 386 - -
Alju06g0342 1126 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 393 642 IPR027417 -
Alju06g0342 1126 Pfam Snf2-ATP coupling, chromatin remodelling complex 929 995 IPR029295 GO:0042393
Alju06g0342 1126 MobiDBLite consensus disorder prediction 51 90 - -
Alju06g0342 1126 Gene3D - 387 641 IPR038718 -
Alju06g0342 1126 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 429 595 IPR014001 -
Alju06g0342 1126 Coils Coil 931 951 - -
Alju06g0342 1126 CDD SF2_C_SNF 718 851 - -
Alju06g0342 1126 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 730 897 IPR001650 -
Alju06g0342 1126 MobiDBLite consensus disorder prediction 1021 1045 - -
Alju06g0342 1126 Gene3D - 648 947 IPR027417 -
Alju06g0342 1126 Coils Coil 211 238 - -
Alju06g0342 1126 SMART SnAC_2 933 995 IPR029295 GO:0042393
Alju06g0342 1126 MobiDBLite consensus disorder prediction 1008 1081 - -
Alju06g0342 1126 FunFam Chromatin structure-remodeling complex protein SYD 408 651 - -
Alju06g0342 1126 Pfam Helicase conserved C-terminal domain 727 840 IPR001650 -
Alju06g0342 1126 SMART ultradead3 413 606 IPR014001 -
Alju06g0342 1126 MobiDBLite consensus disorder prediction 1099 1126 - -
Alju06g0342 1126 MobiDBLite consensus disorder prediction 331 387 - -
Alju06g0342 1126 FunFam Probable ATP-dependent DNA helicase CHR12 648 946 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju06g0342 Alju-ChrAlju06 2853772 2863070 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju06g0342 399 867 RAD5 or RAD16-like Gene Family AT1G02670 27.353 9.56e-35 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Alju06g0342 SNF2_N 8.7e-69 CL0023