Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju06g0334 ATGGATGCCCTCTTACATGCACGGCTTCTTCCCATTTCCTTTGAGAAGCCTACTCCTACTTGTTTTCTTTCTCACTCACAAAATCGTACCTTCAATTTTTTCTTTTCCATGTACCACACCAATCCTGGTCTCCGCTTTATCTCCAAGTTCAGAACTCCACAATCCCTTTTAAATACGTCTTCCTTGGCCCACGGAGCAGTTGATAAGGTTGGTTCTCCCACGTTAAGGGAAATATGCGAAGACCTTGTTCCGCGGCATATATTAGACAGGATGGAAGAAATTGGATATGTTATGCCTACAGATGTCCAGAGGCAAGCATTGCCTTCTCTTTTATCTGGTCGCGATTGCATACTTCATGCTCAGACAGGTTCAGGGAAGACGCTTGCATACCTGCTTCTGATATATTCCGTCATAAACACTGCAAAATCTGCTGTGCAAGCTCTTGTTGTGGTGCCCACTCGTGAACTGGGCATGCAAGTTGCTAAAGTTGCTAGGATGTTGGCAGCAAGTCAGATGGGGATTGAGGAGGAGCGCAAGTCATGCACCGTCATGGCTCTTTTAGATGGAGGAACATTGAGACGACACAAGAGTTGGCTAAAGGCAGAACCTCCAATGATAGTGGTAGCAACAGTGGGTAGTTTATGCCACATAATTGAAAGACAATTTTTAAAGCTTGAATCTGTGCGGGTGTTAGTAGTTGATGAGGTTGACTTTATTTTCAATTCTTCAAACCAAGTCAGTTCCCTTCGAAAGCTTTTAACTTTGTATTCGTCATGCAATCACCGGCAGACAGTTTTTGCCAGTGCATCTATACCACAACACAGACGATTTCTTCATGATTGTGTGCAGCAGAAGTGGACTAAGAGTGACGTGGTCCATATTCATGTTAGCCCAGTTGAGCCCATGCCACCACGCCTGCATCATAGATTTGTAATATGTCATAGGAACAAGAAGCAACAAACCCTGTTATCTTTGATACAATCGGATGCACCTGAGTCGGGCATTATATTTGTCAGTGAGCAGTCGGAGAGGTCAAAACGGGCAGGAAATGCTCCATCGACGTCCCTTCTGAGTGACTTTGTGAAGACTTCATATCAAGGTCCTTTAGATATCCTCCTCCTTGAGGAAGACATGAATTTCAATTCACGAGCAGTTTCACTGTTGGAGGTAAGGAAAGGTGGCGGCTATCTTCTTGTAGCAACAGATATAGCTTCAAGAGGAGTTGACCTTCCAGAAATGTCTCACATTTACAACTTTGATCTGCCTAAGACTGCCGTAGATTATCTTCATCGGGCAGGTAGGACTTGTAGGAAACCTTTTTCTGACATGAAGTGTACTGTTACCACTCTCATTGTTCCAGAGGAGCGGTTTGTTCTCCAGAAGTATGAAAATGAGTTAATGTTCAGTTGTGAAGAGCTTACTTTATAA 1428 0.4377 MDALLHARLLPISFEKPTPTCFLSHSQNRTFNFFFSMYHTNPGLRFISKFRTPQSLLNTSSLAHGAVDKVGSPTLREICEDLVPRHILDRMEEIGYVMPTDVQRQALPSLLSGRDCILHAQTGSGKTLAYLLLIYSVINTAKSAVQALVVVPTRELGMQVAKVARMLAASQMGIEEERKSCTVMALLDGGTLRRHKSWLKAEPPMIVVATVGSLCHIIERQFLKLESVRVLVVDEVDFIFNSSNQVSSLRKLLTLYSSCNHRQTVFASASIPQHRRFLHDCVQQKWTKSDVVHIHVSPVEPMPPRLHHRFVICHRNKKQQTLLSLIQSDAPESGIIFVSEQSERSKRAGNAPSTSLLSDFVKTSYQGPLDILLLEEDMNFNSRAVSLLEVRKGGGYLLVATDIASRGVDLPEMSHIYNFDLPKTAVDYLHRAGRTCRKPFSDMKCTVTTLIVPEERFVLQKYENELMFSCEELTL 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju06g0334 475 Gene3D - 61 286 IPR027417 -
Alju06g0334 475 CDD DEADc 87 282 - -
Alju06g0334 475 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 108 451 IPR027417 -
Alju06g0334 475 CDD SF2_C_DEAD 306 451 - -
Alju06g0334 475 Gene3D - 303 473 IPR027417 -
Alju06g0334 475 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 107 289 IPR014001 -
Alju06g0334 475 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 318 475 IPR001650 -
Alju06g0334 475 Pfam DEAD/DEAH box helicase 100 273 IPR011545 GO:0003676|GO:0005524
Alju06g0334 475 SMART helicmild6 355 439 IPR001650 -
Alju06g0334 475 SMART ultradead3 95 309 IPR014001 -
Alju06g0334 475 Pfam Helicase conserved C-terminal domain 318 437 IPR001650 -
Alju06g0334 475 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL 83 468 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju06g0334 Alju-ChrAlju06 2779896 2783150 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju06g0334 95 464 Eukaryotic Initiation Factors Gene Family AT1G72730 26.247 2.28e-29 117