Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju06g0322 ATGGGAAATTTATGGAGTAGCAGACGGAGAAACAATTACTTTCACTATCCACCTCCACCTCCACCACCACCTCCTCCCCCTCATCTGCCACCTCCTTATTACTATTCCGCAGATTCCCATCTTCCTCCTCCGCCCCCGCCACCGCCGCCTCAGCCGCAAGGCTATTATCTGACCAATTCTTACGTCAGCACGCCTCCGCCGCAGCCTCATCCTCACGCCCATTCATTCAGTTACTCAAATGGGCAGAGCTATTGCCCCAACTATGGCAATTCTATGACGGGTCGCTTTCAGTTCCAGCCTTATTATGTAAATCAGGGCACTGGTGGCTGGCCTCCGATTCGTCCTCCTCTTGCTCCTGCCAATCCCCCTCCGCCCTATGTCGATCATCAAACCGCTAAGAAGGTCAAAAATGACGTCAATGTGCATAAAGATACTTTGCGGCTAGAGTTGGATGAGCACAATCCTGACCAGCACTTGGTTTCATTTGTTTTCGATGCCTTATATGATGGGAGCATTTCTATAATCTACTTTGCCAAGGAAGTGGAAACATGCAAGTTCATTCCACTTTTTCCTGAGATTGAACCGGTCAAAATCCCTTTCCAGAAAGGAGCTGGACAAAAGTTTTGTCAGCCTTCAGGAACTGGCATTGACTTAGGCTTCTTTGAGTTGGATGATCTCTCAAAACCCTCACAAGAAGAAGATGTCTTTCCTCTTGTGGTATGTGCTGAAACATATTCAAGAACTCCTCCAGCGGATGAAAAATTTGGTGATTTGGTCGCTGATGTATCACCTAACAAGCAGATAACTCAAACTGTTATTGAGAAAAGCAATGGTAGTGGTTCTTTCCAGGTCAAAGTAATTAGGCAGATTTTGTGGATTGATGGAGATCGTTATGAATTAAGAGAGATATATGGAATTGGAGGCTCAGCAGCAGCAGATTTCAATGACAATGATCCTGAGAAGGAGGAGTGTGTGATATGCATGACTGAACCAAAGGACACTGCTGTCTTACCTTGTCGTCATATGTGTATGTGCAGTGAGTGCGCCAAAGCTTTGAGGCTTCAATCAAATAAGTGCCCTATATGCCGTCAATCCATTGAGGAACTTATAGAGATCAAGATAAATAATGGTCACCAATGA 1140 0.4544 MGNLWSSRRRNNYFHYPPPPPPPPPPPHLPPPYYYSADSHLPPPPPPPPPQPQGYYLTNSYVSTPPPQPHPHAHSFSYSNGQSYCPNYGNSMTGRFQFQPYYVNQGTGGWPPIRPPLAPANPPPPYVDHQTAKKVKNDVNVHKDTLRLELDEHNPDQHLVSFVFDALYDGSISIIYFAKEVETCKFIPLFPEIEPVKIPFQKGAGQKFCQPSGTGIDLGFFELDDLSKPSQEEDVFPLVVCAETYSRTPPADEKFGDLVADVSPNKQITQTVIEKSNGSGSFQVKVIRQILWIDGDRYELREIYGIGGSAAADFNDNDPEKEECVICMTEPKDTAVLPCRHMCMCSECAKALRLQSNKCPICRQSIEELIEIKINNGHQ 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju06g0322 379 MobiDBLite consensus disorder prediction 14 54 - -
Alju06g0322 379 SUPERFAMILY RING/U-box 318 369 - -
Alju06g0322 379 CDD mRING-HC-C3HC5_MGRN1-like 323 363 IPR045195 -
Alju06g0322 379 MobiDBLite consensus disorder prediction 1 75 - -
Alju06g0322 379 FunFam probable E3 ubiquitin-protein ligase LOG2 307 373 - -
Alju06g0322 379 ProSiteProfiles Zinc finger RING-type profile. 324 363 IPR001841 -
Alju06g0322 379 PANTHER MAHOGUNIN 1 373 IPR045194 GO:0061630
Alju06g0322 379 Pfam Zinc finger, C3HC4 type (RING finger) 321 368 - -
Alju06g0322 379 PIRSF SBP1_RNase_bind 36 161 IPR017066 -
Alju06g0322 379 PIRSF SBP1_RNase_bind 299 374 IPR017066 -
Alju06g0322 379 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 310 377 IPR013083 -
Alju06g0322 379 SMART ring_2 324 362 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju06g0322 Alju-ChrAlju06 2624576 2632814 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju06g0322 94 379 C3H Transcription Factor Family AT3G06140 56.229 1.97e-104 310