Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju06g0310 ATGTCAGGCCCTGAGTGCTGCTCAAACCCACCAATCCTGGATCCAAACTCTGGAGCAGGCCACGTTCAAAAACTCGGTGGCCTCAACTCTTATGTCTCTGGCCACTCCATTTATAAGCACGCTGTTCTTTTGGTGTCAGAAGTTTTTGGATATGAAGCTCCGATTCTAAGGAAGCTTGCAGACAAGATTGCAGCTAAAGGGTACTATGTAGTGGTCCCTGATTTCTTGTATGGAGATCCTTTTGCTTACGAAAATGCCAACAGAACGCTGCCAGTTTGGCTTAAAGATCATGATCCAGAAAAAGCATTTGAAGATGCAAAACCAGTAATTGAAGCCTTAAAAAGTATGGGAGCTTTGTCTATTGGGGCTGCATCTTTTTGTTGGGGCGCAAAGTGTGTTGTAGAACTTGCCAAGTCTGGAATGATTCAAGCTGCTGTGCTATTTCATCCATCATTTGTTACTGTGGATGACATCAAGGGGGTTAATATACCAATTGCAATACTTGGAGCTGAGATTGACCAATACTGCCCTCCAGAACTAGTGAAACAGTTTGAAGAGGTCCTAACTGCTCAACTTGGGGATGATTGTTATGTGAAGGTTGTTCCAAAGGTGTGTCATGGATGGACTGTGAGGTACAACATGGACGATGAAGCAGCTGTGATGGCTGCAGAGGAAGCCCATCTGAAATTATTGGCTTGGTTTGCTAAGCATTGTCGGTTTTCCTCTTCGAGATTGCACCGACGAGAATACGTGGATGATTGGATATACTGTTCCAGGCAGTTCATCACGCTCTCCTCTTCCCCCACCGTTTGTAGCTTCCAAACCGGCGCTGTAGCTCGGAGGCTCCGCTGTTCTAACGTGAATTCATTTGTTGATTTGGTTCAAGAGCAGTTGGAATATTACGTGCTGTCTACAAAATCATGGTATTGGTTACAATTAATTCTTGTTGAATTTGTAACAGTGACAATGGTGAGGGTCAGTGTTTTGAATGATGCTCTCAAGAGCATGTATAATGCTGAGAAAAGGGGGAAGCGTCAGGTCATGATTAGGCCATCCTCAAAAGTCATTATTAAGTTCCTTCTCGTCATGCAGAAGCATGGGTACATTGGGGAGTTTGAATATGTGGATGACCACAGGGCTGGCAAAATTGTGGTTGAGCTGAATGGAAGATTGAATAAATGTGGGGTTATTAGTCCCCGTTTTGATGTGGGTGTCAAGGAGATAGAACCCTGGACTGCTAGGCTGCTTCCCTCAAGACAGTTTGGCTACATCGTCTTGACAACCTCAGCTGGTATTATGGATCATGAAGAGGCCAGGAGGAAGAATGTTGGTGGAAAAGTGTTGGGTTTCTTTTACTAG 1359 0.4452 MSGPECCSNPPILDPNSGAGHVQKLGGLNSYVSGHSIYKHAVLLVSEVFGYEAPILRKLADKIAAKGYYVVVPDFLYGDPFAYENANRTLPVWLKDHDPEKAFEDAKPVIEALKSMGALSIGAASFCWGAKCVVELAKSGMIQAAVLFHPSFVTVDDIKGVNIPIAILGAEIDQYCPPELVKQFEEVLTAQLGDDCYVKVVPKVCHGWTVRYNMDDEAAVMAAEEAHLKLLAWFAKHCRFSSSRLHRREYVDDWIYCSRQFITLSSSPTVCSFQTGAVARRLRCSNVNSFVDLVQEQLEYYVLSTKSWYWLQLILVEFVTVTMVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEPWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju06g0310 452 ProSitePatterns Ribosomal protein S8 signature. 422 439 IPR000630 GO:0003735|GO:0005840|GO:0006412
Alju06g0310 452 Gene3D alpha/beta hydrolase 34 238 IPR029058 -
Alju06g0310 452 Pfam Dienelactone hydrolase family 39 237 IPR002925 GO:0016787
Alju06g0310 452 SUPERFAMILY alpha/beta-Hydrolases 40 237 IPR029058 -
Alju06g0310 452 SUPERFAMILY Ribosomal protein S8 326 452 IPR035987 GO:0003735|GO:0005840|GO:0006412
Alju06g0310 452 Gene3D - 323 391 - -
Alju06g0310 452 PANTHER DIENELACTONE HYDROLASE 1 237 - -
Alju06g0310 452 FunFam 40S ribosomal protein S15a 323 391 - -
Alju06g0310 452 FunFam 40S ribosomal protein S15a 392 452 - -
Alju06g0310 452 Pfam Ribosomal protein S8 329 452 IPR000630 GO:0003735|GO:0005840|GO:0006412
Alju06g0310 452 Hamap 30S ribosomal protein S8 [rpsH]. 324 452 IPR000630 GO:0003735|GO:0005840|GO:0006412
Alju06g0310 452 Gene3D - 392 452 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju06g0310 Alju-ChrAlju06 2501516 2508579 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju06g0310 323 452 Cytoplasmic Ribosomal Protein Gene Family AT5G59850 96.923 1.94e-88 263