Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju06g0271 ATGGAAACCCAAGCTCCTTCTACTCCGACACCAGCCCTGTCACCCTCATTGACTCCGCCGCCGCCATCGGCCCTCGATCAACCACCGGGGGTTTCTGAAATGGAGGTGCAACATCATCTGTCGGAAGACGCTTCATCTGTTTGGGACCTGGATTGCCTATTGGATTTCAGCTTGGACGAGAATTTAGCTTTATCGTTAGACGATTATCATCCTAATTCAGAGGTTCCTCAAAGTCCGGTGTTTCCTTCTCAAGAGATTCCTAGTTCTGAGAAGGTTCGCAAGCGAGACCCCAGGTTGACTTGTTCCAATTACCTGGCTGGTCGGGTCCCATGTGCTTGCCCGGAGGTCGATGCTAAGCTCGAGGAAGAAGGTTTTCCTGGCAAGAAGCGCGCTCGCACCGTGCGGGCATCCGTTGGGATTGCACGGTGCCAGGTACCTGGGTGTGAGGCAGATATTAGTGAGCTCAAAGGCTATCATCGGAGGCACAGGGTTTGTTTGCGTTGCGCTAATGCTAGTACGGTTATGCTTGATGGGGAGGCCAAGAGATACTGCCAACAGTGTGGAAAGTTTCACTTATTATCAGATTTTGATGAAGGTAAACGAAGCTGCAGAAGAAAATTAGAGCGCCACAACAACCGAAGGCGTAGAAAGCCTACAGAAACCAGTGCTGCAGAAGATCATGAAGTTCAACCTGTCAAACAGACTGAGGATGATGTGGGAAAAGATAGTTCACATATAAGCAGTGAGATAAACGACCTAGAAATTTCCCTGGATTGTGAAGATGGACAACTTACTGCCCCATGTTCGGCTTCTGATACCTTGAACGTTAAAAACGATAGTTTTGTGTCCTCTGTTGCTTGCGGTGAAACACAATTGAATGGTGGAAAAGAGAATTCTAACATTTCTTATTCACCATCATATTGTGAAAAGAGTGCTTACTCGTCAATGTGCCCAACAGGTCGAGTATCTTTTAAGCTTTATGATTGGAATCCTGCGGAGTTTCCTAGAAGGCTACGGCATCAAATATTCCAATGGTTGGCCAGTATGCCTGTTGAGCTGGAGGGTTATATCCGCCCTGGGTGTACAATTCTGACAGTTTTTGTAACTATGCCTAAATTTATGTGGACAAGTTTACTTGAAGAGCCTCTGTATTACGTGCAAGACATAGTCGCTCCCGGAAAGATGCTATATGGAAGAGGCACCATATTTGTTCATCTCAATGACATGGTCTTCCGCGTTTTAAAAGACGAAACTTCTGTGATGGAAGTTCAGATAAAGGTGAATGCACCAAGGCTTCACTATGTTCATCCCACATACTTTGAAGCTGGGAAACCTATGGAATTTGTTGCTTGTGGAAGTAACTTGCTGCAGCCTAAGTTTCGGCTTCTCATATCTTTTTCAGGAAAGTATTTAAAGTATAAAAATTGTGTGGTATCTCCTCATAACTGGGCAGGAGATGGCATTTCTTGTGCTTTTGACGGTCAGTTGTATAAGATTTGTGTCCCTCATACGGAGCCAAACATATTTGGACCTGCATTTATTGAGGTGGAGAATGAGTCTGGTTTATCGAACTTCATTCCTGTACTCATTGGGGACGCCAAAATCTGCTCTGAATTGGAGACAATGCAGCAAAAACTAGATACATCTCTTCTTTCGAAACAAATGCAGGCTGCATCTGGCAGTTCTATTTGCAGCTTCTGTGCAGCTTTTGCACTGAGACATACAGCATACTCAGACTTACTGTTAGATATAGCATGGCTGCTTAAAGATCCCACTTCAGAAGATTTTCATAGAGCCATGACAACTTCTCAAATTCAAAGATTTTGTTATTTGATAGACTTTCTGATGTGCAATGACTTGATTGTCATTTTGGGGAAAATATTGTGGAATTTGGATATTTTGACAGAAAGCATGGAAATGAACAATGTAATTAACAGAATGAGTGAGGCTGACATGACATTACTACTGAAACACACGTGTCAAGCTAGAGAGTTCCTTTGTCAGAAACATCAGAAGGGTGAAGATTTAATCTTGCACTTTGTTTTTTCTGAAATGGAAGGGCATAAAGTTGCTCCAAGCTGCTATCAAGATAAGATACAATCGGTTGTCACTATCGGCAATCAGGGTGCCGAGTCAAGGGCAGATGCTAAATTGGGAGTGAGAAGTTCAACTTGGGTTGACAAAAGTGAAAGGATACCTCTTTTGGGGAATGGTATTCTAATGAACATGGAAGAGTCGCCTCGTCGATATCGATATCTTGCGAAGCGGCCGGCCATTCTCATGATTGCTGCATTTGCTGTGTGTTTTGGGGTTTGCGCAGCCCTCCTTCATCCTGGGAGGGTTGGTGAGTTTGCAGTATCCATTAGAAGGTGCTTGTTCAACAATTCATAG 2391 0.44 METQAPSTPTPALSPSLTPPPPSALDQPPGVSEMEVQHHLSEDASSVWDLDCLLDFSLDENLALSLDDYHPNSEVPQSPVFPSQEIPSSEKVRKRDPRLTCSNYLAGRVPCACPEVDAKLEEEGFPGKKRARTVRASVGIARCQVPGCEADISELKGYHRRHRVCLRCANASTVMLDGEAKRYCQQCGKFHLLSDFDEGKRSCRRKLERHNNRRRRKPTETSAAEDHEVQPVKQTEDDVGKDSSHISSEINDLEISLDCEDGQLTAPCSASDTLNVKNDSFVSSVACGETQLNGGKENSNISYSPSYCEKSAYSSMCPTGRVSFKLYDWNPAEFPRRLRHQIFQWLASMPVELEGYIRPGCTILTVFVTMPKFMWTSLLEEPLYYVQDIVAPGKMLYGRGTIFVHLNDMVFRVLKDETSVMEVQIKVNAPRLHYVHPTYFEAGKPMEFVACGSNLLQPKFRLLISFSGKYLKYKNCVVSPHNWAGDGISCAFDGQLYKICVPHTEPNIFGPAFIEVENESGLSNFIPVLIGDAKICSELETMQQKLDTSLLSKQMQAASGSSICSFCAAFALRHTAYSDLLLDIAWLLKDPTSEDFHRAMTTSQIQRFCYLIDFLMCNDLIVILGKILWNLDILTESMEMNNVINRMSEADMTLLLKHTCQAREFLCQKHQKGEDLILHFVFSEMEGHKVAPSCYQDKIQSVVTIGNQGAESRADAKLGVRSSTWVDKSERIPLLGNGILMNMEESPRRYRYLAKRPAILMIAAFAVCFGVCAALLHPGRVGEFAVSIRRCLFNNS 796
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju06g0271 796 MobiDBLite consensus disorder prediction 214 245 - -
Alju06g0271 796 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 94 622 IPR044817 GO:0003677
Alju06g0271 796 MobiDBLite consensus disorder prediction 208 245 - -
Alju06g0271 796 MobiDBLite consensus disorder prediction 1 38 - -
Alju06g0271 796 Gene3D - 139 204 IPR036893 GO:0003677|GO:0005634
Alju06g0271 796 MobiDBLite consensus disorder prediction 69 93 - -
Alju06g0271 796 ProSiteProfiles Zinc finger SBP-type profile. 140 217 IPR004333 GO:0003677
Alju06g0271 796 Pfam SBP domain 143 217 IPR004333 GO:0003677
Alju06g0271 796 SUPERFAMILY SBT domain 141 221 IPR036893 GO:0003677|GO:0005634
Alju06g0271 796 MobiDBLite consensus disorder prediction 12 27 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju06g0271 Alju-ChrAlju06 2210559 2216677 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju06g0271 27 789 SBP-box Gene Family AT5G18830 46.424 0.0 676
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Alju06g0271 SBP 5.6e-28 No_clan