Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju06g0270 ATGAGTATAAATTTGAGCAGGGTTTCTCTATCTTTCTTGGTTCACTCAGAAAATTTTGCGCCAATGGCGAGATACCGAAGCCGGAGCAGAAGTTACAGCCCTCGCCGGCGAAGCAGAACCCCACCGCGTGGACGCAAGCGTTACGACGATGAACCTCGTGATCGCTACCGTGACAGCAGGTCCCACAGAGACCGCCGCTCTCCTGCTCCTTCAGGCTTGCTTGTCCGTAATCTTCCGCTCGATGCTAAGCCTGAAGATCTTAGGGGCCCCTTTGAGCGCTATGGCCCTGTGAAAGATGTATATCTTCCCAAGAATTACTACACTGGCGAGCCCCGTGGCTTTGGCTTTGTAAAATTCCGGTATGCTGAAGATGCTGCTGAAGCAAAGCAACAACTTAATCATACTGTTATTGGTGGACGTGAAATAAGAATTGTATATGCTGAGGAAAATAGGAAAACTCCTCAAGAAATGCGTGTGAATACTCGCGTAAGTGGTCGGTATGGAGGAAATGGTAGAAGAAGAACTCCAAGATCTCCTAGGCGCCAATATCGTTCCTATTCAAGGTCTCTATCACCAGCTGGGGATCACTCAAGATATTAA 600 0.4833 MSINLSRVSLSFLVHSENFAPMARYRSRSRSYSPRRRSRTPPRGRKRYDDEPRDRYRDSRSHRDRRSPAPSGLLVRNLPLDAKPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQQLNHTVIGGREIRIVYAEENRKTPQEMRVNTRVSGRYGGNGRRRTPRSPRRQYRSYSRSLSPAGDHSRY 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju06g0270 199 MobiDBLite consensus disorder prediction 43 69 - -
Alju06g0270 199 SUPERFAMILY RNA-binding domain, RBD 68 176 IPR035979 GO:0003676
Alju06g0270 199 FunFam Serine/arginine-rich SC35-like splicing factor SCL28 23 163 - -
Alju06g0270 199 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 67 188 - -
Alju06g0270 199 SMART rrm1_1 72 145 IPR000504 GO:0003723
Alju06g0270 199 MobiDBLite consensus disorder prediction 25 76 - -
Alju06g0270 199 MobiDBLite consensus disorder prediction 153 199 - -
Alju06g0270 199 MobiDBLite consensus disorder prediction 182 199 - -
Alju06g0270 199 Gene3D - 17 160 IPR012677 -
Alju06g0270 199 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 73 143 IPR000504 GO:0003723
Alju06g0270 199 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 71 149 IPR000504 GO:0003723
Alju06g0270 199 SMART rrm2_1 72 145 IPR003954 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju06g0270 Alju-ChrAlju06 2188384 2191136 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju06g0270 63 158 Eukaryotic Initiation Factors Gene Family AT1G22760 28.571 3.08e-08 51.2