Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju06g0221 ATGAATAATGTTAGAAGTAATGACAATATGCAAAAATTCAAAGGCGTAGTGCCACAGCAAAATGGTCATTGGGGTGCTCAAATATATGCAAATCACCAAAGAATATGGCTTGGAACCTTCAAATCTAAATGTGAAGCCGCCATGGCTTACGATAGCGCCACCATCAAGCTCCGGAGCGGCGAGAGCCACCGGAATTTCCCGTGGAATGATCAAACGGTTCAAGAGCCTCTTTTCCAAAGCCATTACAGCACAGAAGCAGTCCTAAGCATGATCAGAGATGGTACATATCCTTCAAAGTTTGCTTCTTTTCTCTTAAGCACTCAAACCCTAACCCTAACCCTAAATGGCCATGAACAAATAACAAGGGCCAGAAATAACGGTGAAGAAAAATTCTCCTGCACCCAACTTTTCCAAAAGGAACTTACACCAAGTGACGTGGGCAAACTCAATAGGCTTGTCATCCCCAAGAAACATGCAAGTAGGTATTTCCCTTACGTTTCTGGCACTACAGAAGAAGCCGACGATGATGATAATAATCATGTGACGACGGATATGATTAATAGTGATGTTGAGCTTGTGTTTTACGACAAGCTAATGAGGTCGTGGAAATTTAGGTACTGTTATTGGAGAAGCAGTCAAAGCTTTGTGTTTACGAGGGGTTGGAACAGGTTTGTGAAAGACAAGAGATTGAAGGCTAAGGACGTTATTGTGTTTTATAAGTGTGAGCCTATAATTGATATGGGGATTGATAATGTTGGTCAAGTTTTTTATTTGATTGATGTGATCTATAATAATGAAGATAATATAAATGAGAGCTCAAGGACACAGTCTTCTGGGAAAATGTTGAGTTTCAACAATATAACAGAAGAAGATGATGATGATACAAAAGAAATCAAGGAAATATTATTGCATTCTCCAACAGATCTTGCTGCACAAAAGGGTTTGAAGCTTTTCGGTGTAAGAATTAACTGA 972 0.3951 MNNVRSNDNMQKFKGVVPQQNGHWGAQIYANHQRIWLGTFKSKCEAAMAYDSATIKLRSGESHRNFPWNDQTVQEPLFQSHYSTEAVLSMIRDGTYPSKFASFLLSTQTLTLTLNGHEQITRARNNGEEKFSCTQLFQKELTPSDVGKLNRLVIPKKHASRYFPYVSGTTEEADDDDNNHVTTDMINSDVELVFYDKLMRSWKFRYCYWRSSQSFVFTRGWNRFVKDKRLKAKDVIVFYKCEPIIDMGIDNVGQVFYLIDVIYNNEDNINESSRTQSSGKMLSFNNITEEDDDDTKEIKEILLHSPTDLAAQKGLKLFGVRIN 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju06g0221 323 SMART rav1_2 12 73 IPR001471 GO:0003700|GO:0006355
Alju06g0221 323 FunFam AP2 domain-containing protein RAP2.8 11 68 - -
Alju06g0221 323 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 9 322 IPR044800 GO:0003700
Alju06g0221 323 CDD B3_DNA 136 239 IPR003340 GO:0003677
Alju06g0221 323 ProSiteProfiles B3 DNA-binding domain profile. 137 265 IPR003340 GO:0003677
Alju06g0221 323 SUPERFAMILY DNA-binding domain 12 69 IPR016177 GO:0003677
Alju06g0221 323 SUPERFAMILY DNA-binding pseudobarrel domain 135 241 IPR015300 -
Alju06g0221 323 Gene3D - 125 252 IPR015300 -
Alju06g0221 323 ProSiteProfiles AP2/ERF domain profile. 12 67 IPR001471 GO:0003700|GO:0006355
Alju06g0221 323 CDD AP2 11 69 IPR001471 GO:0003700|GO:0006355
Alju06g0221 323 Gene3D AP2/ERF domain 11 68 IPR036955 GO:0003700|GO:0006355
Alju06g0221 323 Pfam B3 DNA binding domain 137 239 IPR003340 GO:0003677
Alju06g0221 323 SMART B3_2 137 253 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju06g0221 Alju-ChrAlju06 1791188 1792159 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju06g0221 9 261 RAV Transcription Factor Family AT1G51120 60.536 1.61e-105 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Alju06g0221 B3 6e-25 CL0405