Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju06g0218 ATGGCTTCATCTTTGGAGGAGCTTCTGGCAAAGGAAGGGTTCAAAAAGAGCAGAAGAATGACAAGGTCCATATCTTCCCTGCAGTCTGATGCTGTAACTGCACAGCCACCATATCGCTCTTTCCACAACCGACAAAGGAAACCTTCTATATTTGGTGAGAGAATTTTAACGGAGAGAGCAAAGTCTGATGTCTCGCGTTATCAGATCAGAAGTGAGTTATTGTATAGTGATGCTGCTAAGAACGCGAGGCCAAGGGATAATCTTGATAAAAGAGAAGATGAAGGACTGAAGAATATAAACGATAAGAAACTTTGTAGCAGTACTGAGGTAAGTACAAAGGTTGATCTAAAATCATCAAAAACTATGCCAAGATTTGAGATAACTGAGGTAAGGGAGAAAGAAGATAGCATAATTAAAGATGTCTATTCAAATGAGACATCTGATACCCCGAGAGGGAAAGAGAAGAATTCAAGTGAATTGCCTGTCATGGATGCAAAGGTGGATAAGAGGCATGACAGTGATCTCGATGCAAATATGCCTGGACATTTCAGAGGAAATGCAAAGAAAAGTATGAAAGAACATAGGAATTCCTACAGTAGATCTACAAGCAAAAGCTTTGATAAAAGTTACCAAAAGCATCATGAAAAGGTGGCTTCTAGTCTAGCTCTTGATGAAGTTGCTGTCCGAGCGATTGTTTCCATTCTAAATGGACATATCAAACGTTTTATGAAAGATGAGGACTTCCGGACTACATTGCGTCCCAATTGTTTCTCTTCATTGAGTTTCATTGAGCCAGAAGATGAGAACAGTTCTGAGGCCAAAGAAGTAACAAGTCTTGAACAAGGAATTGAGACAGTCAAACGAGCTGTTGAAGAATCTTTACCTTCAGAAGAATTGGAAAGAGCTTCTCTGCAGCTAAGCATTGTTGCAGGTTTGAGTTTAAATGATTTCAAATATGGATTTACATGTGGGATTCTGAATTATAAGTTGTCAGCTTCTGCTCATCTTTACCTCAGTGCATTATATAAGATTCAGAGAAAAGATAAGGCGTCAGCAAAGCATCTTTTGCAAGTGTTTTGCGATTCACCTTTCCAGGCACGGACATTGTTGCTGCCTGAGCTGTGGGAGGATCTATTTTCTCCTCATTTTTTCCATTTGAAGGCATGGTACTCTGAGGAAGTTGACATTCTAGCCAATAGGCCAAGCAGAGCAAGAAAACAAAATCTTCTTGAAAAAGTCTATGAGGAACATTTGGACTCTGGAACTTACATGTTTGCTGAATACTACAAAAATTGGCTCACCGAAGGAGTTGAACCTCCATCTGTTCCTTCTATCAGTATACCATCGATCTCTGTCTTGGGAAGTTCGCTGGGTCATTCGTCAGAGCTTTCTAGTCCCATTGATTCATTCTCACCTCAACCAACCGTCAGCAAAAGACTCTATCATTCTGTCTTTGGTAGCTTGAATGAACCGGGAATTGATGACCATGAAGATAGTGAGGAGGATAATGACATACATACTTGTATCAGAGGTTGTTACGGTTCAGCTGCTGTTGAGCAAACATCAACACATGTATCTGAAATTGTGAAATTCACTGATCAAGATGTCAAGGAAGACTCCACTAAGAATGTGGCACTTGTTTCATTGCATCCTAAAGGAATCTCAACAACAGATAAAAAGGAAAAGGGAGAAAGAAATCATTGTGATGGCATTGGAAACGACTACATGCCAGACATTAAAGAAAAAGAAGTCATTTTTGGAAAGCCAATTAAGAAAAGCTCTTCTCTTGAAGGATTATCTTTTCCAACCATTCCACAAGAATTTCTTTGTCCTCTTACTGGAAAATTATTAGAGGAACCAATCACTATAGAGACTGGGCAAACCTTTGAACATGCAGCCCTCAAGTCATGGTTCCAAAAGGGACACAGAACATGTCCTGTAACAAGAGTTACTTTAGACTTTGTAGCTATGCCACTGACTAGCATTGTCTTGAAGCGATTGATTCATAATTGGAAGTCAGAACAATTAAGTGAGCTCTTGGCTTCCGCTTCCCTAATCTCAAAAAATTCAAGAGAGTCAATGCTAAAGGATAGGGATGAGATCATTACTTCGAAATTAGAGATTCTCTTCACTTTGTTAAATGAAGAGGACAAAGTAACTTGTGCCAAGCATCTCATATCCTTGGGGGTTTTAGAATTTCTGCTTAGGAGATTCGAATTGGGAAATTTGGAAGAGAAAACACGTGTGGCGGCACTCTTGCCAAATTTTATTGGGGCAGACTCTTGTTGCATGTATCAGATTTCGAGAGATATTAATAAAAGGTTTCTTCTTGATCTTCTTCACCACAGGGAGGTTACTCCAAGAACTAACGCAATATTATTGCTTACCAAACTGTTAGCATTAAAAAGAAGAAAGGATGTTACTTCATTCTTAAATAGCTTGAAGGGTGAGGATATATCTATTACAATGCGTGTTCTGCTCATGCACCTCAATAATTCTCCACCACATCACAAACCTCTAATTGCTGTCCTTTTGTTGCACTTTGATCTACTGATTTCACTTCAGGCAAAGGCAAAGACTCAAAATTATGGCTCATACAGATACCAGGCTGTGAATTTCATTTCAGAGGCTCTTCATGCCGGCTTAAATGAAGAGAGAGTCCGAGAAAATTGTTGTAGAGCACTTTTTATCTTGTCTGGGCATTTTTCTTCCACTGGGAAGGTACTGACCAAGAGTAGCATTCTAAAAGAAGTGGGATATATAATCGATAGTTCAGAAGTTGACACTTATGATCATGAGGAAGATGATTTATTATGGGATGGAGCCATTTCATTTGAAAAGGAAGAAGAACGGAGCAAAGAGTGGTTGGTGAACTTGTTAGAATCTATTATTGGTGATGGAGAGAGTCCATTTTTGAAGTCTATCTCTAAATGTTTAGACTCTGGACACCCAGATTTGGTCAGCATGTGTTTGGTAACTGTTGCATGGTTGAGCTCCTCGCTTTCTATGCAGCATAATGCTGGATTACACCTTAATACCTTCTTAGCCGTCATTTATGAGATAAAACAAGTCCTGGAAAATGGGGAACTTGAACTCAAGATTTTTGCTTCTATGTGCTTGCTTAATTTCAGCAAAATATCAGAATGCAGAACACTTTTGACGGCTATGGCAGAAGATATTGATGGTCCTCTTCATGAACTACTTGATGTGACATGGACTGCAAAGCAGCTACATGCGATTTTTTCTGGCGTGGATTTGTAA 3261 0.3934 MASSLEELLAKEGFKKSRRMTRSISSLQSDAVTAQPPYRSFHNRQRKPSIFGERILTERAKSDVSRYQIRSELLYSDAAKNARPRDNLDKREDEGLKNINDKKLCSSTEVSTKVDLKSSKTMPRFEITEVREKEDSIIKDVYSNETSDTPRGKEKNSSELPVMDAKVDKRHDSDLDANMPGHFRGNAKKSMKEHRNSYSRSTSKSFDKSYQKHHEKVASSLALDEVAVRAIVSILNGHIKRFMKDEDFRTTLRPNCFSSLSFIEPEDENSSEAKEVTSLEQGIETVKRAVEESLPSEELERASLQLSIVAGLSLNDFKYGFTCGILNYKLSASAHLYLSALYKIQRKDKASAKHLLQVFCDSPFQARTLLLPELWEDLFSPHFFHLKAWYSEEVDILANRPSRARKQNLLEKVYEEHLDSGTYMFAEYYKNWLTEGVEPPSVPSISIPSISVLGSSLGHSSELSSPIDSFSPQPTVSKRLYHSVFGSLNEPGIDDHEDSEEDNDIHTCIRGCYGSAAVEQTSTHVSEIVKFTDQDVKEDSTKNVALVSLHPKGISTTDKKEKGERNHCDGIGNDYMPDIKEKEVIFGKPIKKSSSLEGLSFPTIPQEFLCPLTGKLLEEPITIETGQTFEHAALKSWFQKGHRTCPVTRVTLDFVAMPLTSIVLKRLIHNWKSEQLSELLASASLISKNSRESMLKDRDEIITSKLEILFTLLNEEDKVTCAKHLISLGVLEFLLRRFELGNLEEKTRVAALLPNFIGADSCCMYQISRDINKRFLLDLLHHREVTPRTNAILLLTKLLALKRRKDVTSFLNSLKGEDISITMRVLLMHLNNSPPHHKPLIAVLLLHFDLLISLQAKAKTQNYGSYRYQAVNFISEALHAGLNEERVRENCCRALFILSGHFSSTGKVLTKSSILKEVGYIIDSSEVDTYDHEEDDLLWDGAISFEKEEERSKEWLVNLLESIIGDGESPFLKSISKCLDSGHPDLVSMCLVTVAWLSSSLSMQHNAGLHLNTFLAVIYEIKQVLENGELELKIFASMCLLNFSKISECRTLLTAMAEDIDGPLHELLDVTWTAKQLHAIFSGVDL 1086
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju06g0218 1086 CDD RING-Ubox_PUB 605 652 IPR045210 -
Alju06g0218 1086 SMART Ubox_2 607 671 IPR003613 GO:0004842|GO:0016567
Alju06g0218 1086 MobiDBLite consensus disorder prediction 139 178 - -
Alju06g0218 1086 SUPERFAMILY ARM repeat 664 1069 IPR016024 -
Alju06g0218 1086 SUPERFAMILY RING/U-box 598 674 - -
Alju06g0218 1086 Pfam U-box domain 604 675 IPR003613 GO:0004842|GO:0016567
Alju06g0218 1086 MobiDBLite consensus disorder prediction 139 209 - -
Alju06g0218 1086 MobiDBLite consensus disorder prediction 20 42 - -
Alju06g0218 1086 ProSiteProfiles U-box domain profile. 603 678 IPR003613 GO:0004842|GO:0016567
Alju06g0218 1086 PANTHER OS04G0584500 PROTEIN 595 1082 - -
Alju06g0218 1086 Gene3D - 850 1081 IPR011989 -
Alju06g0218 1086 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 603 677 IPR013083 -
Alju06g0218 1086 MobiDBLite consensus disorder prediction 17 46 - -
Alju06g0218 1086 MobiDBLite consensus disorder prediction 186 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju06g0218 Alju-ChrAlju06 1764450 1768859 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju06g0218 585 671 U-box Gene Family AT5G42340 41.379 1.12e-15 80.1