LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Alju06g0212	ATGGCATCATCATCGAGTGGCCCCAAGACTGCATTCCCTGTGACAGAGGCAGCTTCGAACCATCGTCTGTATCCTTCTGCTCTTGCAAAATTTGATGATGTCGCGGCTGATCCCAAGCTCTTTATGCAAACCTTGGAGAAGCTCCACCATTCTATGGGTTCCAAGTTCATGATTCCCATTATAGGGGGAAAAGAACTAGATTTGCATCGGCTTTTCTTGGAAGTGACTTCTCGTGGAGGCATTGAGAAAATTATAAGGGAGAGAAGATGGAAAGAAATAACTGCTGGTTTCAAATTTCCATCAACAGCTACGAATGCTTCTTTTGTGTTGCGGAAGTACTATGGTTCATTGCTTTACCACTATGAACAAATATACTATTTTAAGGCCCCAGGATGGAACCGTGAACCTTCTGATGTTGTGCAGAGTCCATCGCCAGTGCCGGTTCCCGCTCCAAATGTGCAGCAGTTTTTGCACCCCCAAGTTAATGCCTCTCAATTGCCTGAAGCGACTTCAGCTTCTTCTGTAGGAACTCCAGTGATTGGGGTGATTGATGGAAAGTTCGAAAGTGGGTATCTTGTTACTGTGACGGTGGGTTCAGAGAAACTTAAAGGTGTTCTATACCAGGCTCCACAAAACCCTGCGTTGCCAACAATGCCGCAACATGGTAGTGTTCCAGTCTATAATAGTAATACCTCATCTACTGCTTTGGGTGTCCATCGTCACCGACGCAAGAAATGTGAGATAAAAAAGAGAGACCCTGATCATCCCAAACCTAATCGAAGCGGATACAATTTCTTCTTTGCAGAGCAACATGCTAGATTGAAACCACTTCACCATGGGAAGGACAGAGAAATCAGTAAGATAATTGGTGAACTCTGGAACAAATTAATGGAGCCGGAGAAAGCAGTTTATCAAGAGAAGGCACTTAAGGATAAAGAGAGGTATCAAGCTGAAATGGAGAATTATAGGGAGAAACTGAAAACAGGCCAGGGTATAGGTGATGCTGCGCCGTTACAACAACAAATTCCTGATAAGGATATGATGGACGCTGACTTGAAAGTGGACGAAACCGTGGGAGCAGAATCTCCTCAAACACCTAATGAGAGCTGTTCTGGTGAAAGTGATTCTGAAGATGATAAAGGTACAGAGCATAATATGGACGTGGATGTATCTGCCGGAATGACAGGAGTGGGTGCTAGCCATCTGGGTGCAGAGAATCTATCAAAGGAGAAAGAAGGGAATGATGATGGAGATCAACATGCTCAAAAGATGGATGAGAGCTCAAGCATGATGGCTGTGTAG	1302	0.4455	MASSSSGPKTAFPVTEAASNHRLYPSALAKFDDVAADPKLFMQTLEKLHHSMGSKFMIPIIGGKELDLHRLFLEVTSRGGIEKIIRERRWKEITAGFKFPSTATNASFVLRKYYGSLLYHYEQIYYFKAPGWNREPSDVVQSPSPVPVPAPNVQQFLHPQVNASQLPEATSASSVGTPVIGVIDGKFESGYLVTVTVGSEKLKGVLYQAPQNPALPTMPQHGSVPVYNSNTSSTALGVHRHRRKKCEIKKRDPDHPKPNRSGYNFFFAEQHARLKPLHHGKDREISKIIGELWNKLMEPEKAVYQEKALKDKERYQAEMENYREKLKTGQGIGDAAPLQQQIPDKDMMDADLKVDETVGAESPQTPNESCSGESDSEDDKGTEHNMDVDVSAGMTGVGASHLGAENLSKEKEGNDDGDQHAQKMDESSSMMAV	433

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Alju06g0212	433	SMART	ARID_2	32	122	-	-
	Alju06g0212	433	PANTHER	HIGH MOBILITY GROUP B PROTEIN 9	13	375	-	-
	Alju06g0212	433	Coils	Coil	305	332	-	-
	Alju06g0212	433	CDD	HMG-box_AtHMGB9-like	256	322	-	-
	Alju06g0212	433	SMART	bright_3	36	127	IPR001606	GO:0003677
	Alju06g0212	433	Pfam	HMG (high mobility group) box	256	323	IPR009071	-
	Alju06g0212	433	ProSiteProfiles	ARID domain profile.	35	126	IPR001606	GO:0003677
	Alju06g0212	433	ProSiteProfiles	HMG boxes A and B DNA-binding domains profile.	256	323	IPR009071	-
	Alju06g0212	433	SUPERFAMILY	ARID-like	33	128	IPR036431	GO:0003677
	Alju06g0212	433	SUPERFAMILY	HMG-box	243	327	IPR036910	-
	Alju06g0212	433	Gene3D	-	26	133	IPR036431	GO:0003677
	Alju06g0212	433	MobiDBLite	consensus disorder prediction	356	433	-	-
	Alju06g0212	433	CDD	ARID_HMGB9-like	37	122	IPR045303	GO:0003677
	Alju06g0212	433	SMART	hmgende2	255	324	IPR009071	-
	Alju06g0212	433	FunFam	High mobility group B protein 15	238	333	-	-
	Alju06g0212	433	Pfam	ARID/BRIGHT DNA binding domain	39	122	IPR001606	GO:0003677
	Alju06g0212	433	MobiDBLite	consensus disorder prediction	405	423	-	-
	Alju06g0212	433	Gene3D	High mobility group box domain	240	334	IPR036910	-
	Alju06g0212	433	FunFam	High mobility group B protein 15	29	142	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Alju06g0212	Alju-ChrAlju06	1674147	1677824	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Alju06g0212	1	354	ARID Transcription Factor Family	AT1G04880	56.952	2.75e-128	376

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	ARID	Alju06g0212		ARID	1.3e-17	CL0123