Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju06g0122 ATGGACGGCGGTGCCCCACCTTCCTCCGCTGGCTCCGGCGGAACTGGAGGTCCCGCACCTTTCCTTATCAAGACCTATGAAATGGTCGACGATTCTTCCTCCGATGATATTGTATCGTGGAGCCCCACCAACAACAGCTTCGTCGTCTGGAATCCCCCTGAGTTCGCTCGTCTTCTTCTTCCTACCTATTTCAAGCACAACAACTTCTCCAGCTTCATCCGTCAGCTCAATACCTACGGATTTCGAAAAATACATCCTGAGCGGTGGGAGTTCGCTAATGATGATTTTGTAAAAGATCAAAAGCATCTTCTCAAGAATATTCACCGCAGGAAACCTATCCACAGTCACAGCAATCCTCCAGGCTCTGGTATGGACCCAGAACGAGCAGCATTTGAGGAAGAAATAGAGAAACTTGGACGTGAGAAATCTGCTCTTGAATCCAACATCGTCAGATTTAAACAACAATCGGCTTTAAAGCTTCAGCTGGAAGATCTGTTGCAGCGATTAGACGGTATGGAGAAGAGACAGAAGAATTTGCTGAACTTCTTTGAAAAGTCTCTTCAGAATCCTTCTTTTGTTGAACATCTTTCACGGAAACTTGATTGCATGGATTTATCAGCATATAAGAAAAGAAGATTACCTCAGGTTGATCAGTCGGCGCCTGTTGGTGAAAGTAACTTGGTTGAAAATCATGGCAATTTTAGAACAGAATTTGGCACTGTCTTCCACCAAGATTTCTCAAATAAACTCAGATTGGAGTTATCACCAGCTGTATCAGATATGAATTTGGTATCACGTAGCACTCAGAGTTCCAATGAAGACGGGGAAAATCCACAGAAGAGGCCATCTGAAGGAACGCCCAAAGGAGTGCAGACAAGAACAACAACTCTTGCATTTGCTCCTGAAACATTAGAGCTTGCAGATACTGGAGCATCTTTTTCTTTCAAGATGGATTCATGTCCATCACAAAGAGCAACAACTGCTGAGAGCACAAAACTACACTCTTTGCATCTAAGTAATGAAGAAGGTGACAGTCACATATCTTGCCATCTAAATTTGACTCTGGCATCTTCTCCTTTACAAGTGAACAGAAATCCATACTCGGCTAGATCACCCCAAATAGACTGTCAGGAAATAGGCAAATTCGCGGAATCAAGATTTCAGGAAAACGATAAAGATTCTAATAGCGGAGTTCCTTCAACCAGAAATCCAGCTCATGAGGTTGCCAATTTAGCTTCCTCACAGTCAAAGGAGACTCCAAGCAGCAACCAAGGGCCACCAGCTACTCCAGCCAGAGTAAATGATGTGTTCTGGGAACAGTTCCTTACCGAAAGACCAGGTTGTTCAGACAATGAAGAGGCAATATCCAACTACAGAGCAAATCCATACGAAGAGCAAGACGAAGGGCGATCAATTCCTGGAATCTCCAGAAATGTTAAGAATATGGATCGGCTGACACTTTGA 1464 0.4392 MDGGAPPSSAGSGGTGGPAPFLIKTYEMVDDSSSDDIVSWSPTNNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYGFRKIHPERWEFANDDFVKDQKHLLKNIHRRKPIHSHSNPPGSGMDPERAAFEEEIEKLGREKSALESNIVRFKQQSALKLQLEDLLQRLDGMEKRQKNLLNFFEKSLQNPSFVEHLSRKLDCMDLSAYKKRRLPQVDQSAPVGESNLVENHGNFRTEFGTVFHQDFSNKLRLELSPAVSDMNLVSRSTQSSNEDGENPQKRPSEGTPKGVQTRTTTLAFAPETLELADTGASFSFKMDSCPSQRATTAESTKLHSLHLSNEEGDSHISCHLNLTLASSPLQVNRNPYSARSPQIDCQEIGKFAESRFQENDKDSNSGVPSTRNPAHEVANLASSQSKETPSSNQGPPATPARVNDVFWEQFLTERPGCSDNEEAISNYRANPYEEQDEGRSIPGISRNVKNMDRLTL 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju06g0122 487 Gene3D - 16 111 IPR036388 -
Alju06g0122 487 ProSitePatterns HSF-type DNA-binding domain signature. 60 84 IPR000232 GO:0003700|GO:0006355|GO:0043565
Alju06g0122 487 MobiDBLite consensus disorder prediction 409 429 - -
Alju06g0122 487 MobiDBLite consensus disorder prediction 447 487 - -
Alju06g0122 487 Coils Coil 128 175 - -
Alju06g0122 487 MobiDBLite consensus disorder prediction 409 431 - -
Alju06g0122 487 MobiDBLite consensus disorder prediction 264 292 - -
Alju06g0122 487 SMART hsfneu3 17 110 IPR000232 GO:0003700|GO:0006355|GO:0043565
Alju06g0122 487 SUPERFAMILY "Winged helix" DNA-binding domain 17 110 IPR036390 -
Alju06g0122 487 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 10 266 IPR027725 -
Alju06g0122 487 FunFam Heat shock transcription factor 1 14 111 - -
Alju06g0122 487 Pfam HSF-type DNA-binding 21 110 IPR000232 GO:0003700|GO:0006355|GO:0043565
Alju06g0122 487 PRINTS Heat shock factor (HSF) domain signature 21 44 IPR000232 GO:0003700|GO:0006355|GO:0043565
Alju06g0122 487 PRINTS Heat shock factor (HSF) domain signature 59 71 IPR000232 GO:0003700|GO:0006355|GO:0043565
Alju06g0122 487 PRINTS Heat shock factor (HSF) domain signature 72 84 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju06g0122 Alju-ChrAlju06 948491 952315 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju06g0122 21 487 HSF AT4G13980 55.391 1.09e-169 484
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Alju06g0122 HSF_DNA-bind 1.9e-31 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju06g0122 06 948491 952315 Alju06g0122 06 948491 952315 ECH