LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Alju06g0042	ATGAGAAAGCCGTCGTGCCGGGCAGCAGCTGCAAAGAGCAGTACTACACCTTGCTGCAGCAAAGTAGGGCTGAAGAGAGGGCCTTGGACTCCTGAGGAGGACGAGCTGCTGTCCAACTACATCCACAAGGAGGGAGAGGGCAGGTGGCGCACCCTCCCCAAGAGAGCGGGTCTCCTCCGCTGCGGGAAAAGCTGCCGCCTCCGCTGGATGAACTACCTCCGCCCCTCCGTCAAGCGCGGCCACATCGCCCCCGACGAGGAGGATCTCATCCTCCGCCTCCATCGCCTCCTCGGCAACCGGTGGTCTCTGATAGCCGGGAGGATCCCGGGGAGAACCGACAACGAGATAAAGAACTACTGGAATACCCATCTCAGCAAGAAGCTCATCAGCCAAGGCATTGATCCCCGTACCCACAAGCCCCTCCCCCCTCACAATAATATTACTATTACTAATAACGCTCTTCCTTCTCCCACTAAACCTAATCCCAATCCCATTACTATTCCTGATCATCATGAGCACGACCCCAATCCCTACTCTCACCCCTTGCATCCCTATGATCATCAACTCAGCGATCTCCCTGCAATCCCCTTGCCCAATACCCCCAGCAATCCCATGGATGACGATGACGACGACATCAACTACTGCACCGACGATGTTTTCTCCTCTTTCATCAACTCCCTCATCAACGACGATGCCTTTTCCTCCGCTCAACACCACCACCCCCCTCCTCCGCCTCCTCCTTATCATGCTGTCGCCTGGGAATCTTCCCTGGTCTCCGCTGCCCGCCACCACGATCCCAACAATGTGCCCGATCATGCTGGTGCTGATGCTGATGCTGCCCTCTAG	846	0.5686	MRKPSCRAAAAKSSTTPCCSKVGLKRGPWTPEEDELLSNYIHKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYLRPSVKRGHIAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLSKKLISQGIDPRTHKPLPPHNNITITNNALPSPTKPNPNPITIPDHHEHDPNPYSHPLHPYDHQLSDLPAIPLPNTPSNPMDDDDDDINYCTDDVFSSFINSLINDDAFSSAQHHHPPPPPPPYHAVAWESSLVSAARHHDPNNVPDHAGADADAAL	281

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Alju06g0042	281	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	74	128	IPR017930	-
	Alju06g0042	281	Gene3D	-	83	146	-	-
	Alju06g0042	281	MobiDBLite	consensus disorder prediction	166	180	-	-
	Alju06g0042	281	CDD	SANT	28	73	IPR001005	-
	Alju06g0042	281	MobiDBLite	consensus disorder prediction	262	281	-	-
	Alju06g0042	281	SUPERFAMILY	Homeodomain-like	23	120	IPR009057	-
	Alju06g0042	281	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	21	73	IPR017930	-
	Alju06g0042	281	SMART	sant	25	75	IPR001005	-
	Alju06g0042	281	SMART	sant	78	126	IPR001005	-
	Alju06g0042	281	FunFam	transcription repressor MYB5-like	83	152	-	-
	Alju06g0042	281	PANTHER	TRANSCRIPTION FACTOR MYB8-RELATED-RELATED	16	151	-	-
	Alju06g0042	281	MobiDBLite	consensus disorder prediction	134	213	-	-
	Alju06g0042	281	Pfam	Myb-like DNA-binding domain	84	124	IPR001005	-
	Alju06g0042	281	Pfam	Myb-like DNA-binding domain	26	73	IPR001005	-
	Alju06g0042	281	Gene3D	-	23	79	-	-
	Alju06g0042	281	ProSiteProfiles	Myb-like domain profile.	21	73	IPR001005	-
	Alju06g0042	281	CDD	SANT	84	124	IPR001005	-
	Alju06g0042	281	ProSiteProfiles	Myb-like domain profile.	74	124	IPR001005	-
	Alju06g0042	281	FunFam	Myb transcription factor	23	79	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Alju06g0042	Alju-ChrAlju06	380869	381813	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Alju06g0042	15	230	MYB Transcription Factor Family	AT3G13540	58.952	4.39e-88	261

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Alju06g0042		Myb_DNA-binding	6.2e-15	CL0123