Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Alju05g2256 | ATGTCTTTCACTGGAACTTTGGATAAATGCAAGGCTTGCGATAAGACGGTTCATGTGGTGGACATGATGACCCTGGAGGGCACTCCCTACCATAAATCCTGCTTCAAGTGCAGCCACTGCAAGGGCTTTCTCTCGATGAGCAGCTACTCGTGGATGGATGGCGTCCTCTACTGCAAGCCCCACTTTGAGCAGCTTTTCAAGGAATCCGGCAATTTCAGCAAGAACTTTCAGTCAGCGAGGGCCCCTGAGAAGAATAGCGATCTGTCAAGGACTGCAAGCAAGCTGTCATCGATGTTCAGCGGAACGCAGGACAAGTGCTCAGTGTGTGAAAAGACAGTGTATCCTCTGGAGAAGATGACGCTGGAAGGAGAGTGCTTCCACAAGTCGTGCTTCAGGTGTGCCCACGCAGGCTGCCCCCTCACCCATTCCTCCTACGCCGCCCTCGACGGCGTCCTCTACTGCAGGCACCACTTCGCCCAGCTCTTCATGGAGAAGGGAAATTACAACCATGTCCTCCAGGCTGCCGCCCACAAGCGCTCCGCCAGCTCTGGCACTCCTCCTCCCGAACCTGCTACTGACGACGACAACGCCACCCCTCCTCCTCATCATGACGACGACGACGACGACGACCCCAAAGATGAACGTCATCATGATGATGACGATGATAAAGAAGACCACTCTTAG | 684 | 0.5453 | MSFTGTLDKCKACDKTVHVVDMMTLEGTPYHKSCFKCSHCKGFLSMSSYSWMDGVLYCKPHFEQLFKESGNFSKNFQSARAPEKNSDLSRTASKLSSMFSGTQDKCSVCEKTVYPLEKMTLEGECFHKSCFRCAHAGCPLTHSSYAALDGVLYCRHHFAQLFMEKGNYNHVLQAAAHKRSASSGTPPPEPATDDDNATPPPHHDDDDDDDPKDERHHDDDDDKEDHS | 227 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Alju05g2256 | 227 | ProSitePatterns | LIM zinc-binding domain signature. | 10 | 44 | IPR001781 | - | |
| Alju05g2256 | 227 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 36 | 76 | - | - | |
| Alju05g2256 | 227 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 98 | 131 | - | - | |
| Alju05g2256 | 227 | FunFam | LIM domain and actin-binding 1 | 4 | 74 | - | - | |
| Alju05g2256 | 227 | MobiDBLite | consensus disorder prediction | 175 | 227 | - | - | |
| Alju05g2256 | 227 | ProSiteProfiles | LIM domain profile. | 8 | 68 | IPR001781 | - | |
| Alju05g2256 | 227 | FunFam | LIM domain and actin-binding 1 | 100 | 170 | - | - | |
| Alju05g2256 | 227 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 132 | 171 | - | - | |
| Alju05g2256 | 227 | Gene3D | Cysteine Rich Protein | 100 | 170 | - | - | |
| Alju05g2256 | 227 | Gene3D | Cysteine Rich Protein | 6 | 74 | - | - | |
| Alju05g2256 | 227 | PANTHER | OS06G0237300 PROTEIN | 6 | 85 | - | - | |
| Alju05g2256 | 227 | MobiDBLite | consensus disorder prediction | 196 | 227 | - | - | |
| Alju05g2256 | 227 | CDD | LIM1_SF3 | 6 | 68 | - | - | |
| Alju05g2256 | 227 | SMART | lim_4 | 105 | 157 | IPR001781 | - | |
| Alju05g2256 | 227 | SMART | lim_4 | 9 | 61 | IPR001781 | - | |
| Alju05g2256 | 227 | Pfam | LIM domain | 10 | 65 | IPR001781 | - | |
| Alju05g2256 | 227 | Pfam | LIM domain | 106 | 161 | IPR001781 | - | |
| Alju05g2256 | 227 | ProSiteProfiles | LIM domain profile. | 104 | 164 | IPR001781 | - | |
| Alju05g2256 | 227 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 3 | 35 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Alju05g2256 | Alju-ChrAlju05 | 55879198 | 55880243 | Dispersed/Wgd |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | LIM | Alju05g2256 | LIM | 3.2e-10 | CL0167 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Alju05g2256 | 05 | 55879198 | 55880243 | Alju05g2256 | 05 | 55879198 | 55880243 | ECH |