Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju05g2252 ATGAACAATAGAGCAAGATACCCACCTGGGATTGGCGTAGGCCGAGGAGGTGTGAACTCGAACGCTGCGTTTCAGCCAAGGCCCCCTCATCAACAACAGTACATGCAGAGGCATTTGGTATCGCAGCATCAACAGTACCATCATCATCATCCGCAACAACAGCAACAGTATCAGCATCATCAACAGCAGCAGCAGAATCAACACCATCATCACCAACAACAACAGTGGCTGAGACGGACGGAGCTGGGTGCTGCTGATTCCAATGTGGTTGACGAGGTCGAGAAGACAGTTCAGTCGGAAGCCGTTGACCCTAGTTCACAAGATTGGAAGGCAAGGCTAAAGATGCCGCCACCTGATACACGCTATAAAACAGAGGATGTAACAGCAACTAAAGGAAATGAATTTGAGGATTATTTTTTGAAGCGTGAACTGCTTATGGGAATATATGAGAAGGGTTTTGAAAGGCCTTCTCCTATTCAGGAAGAAAGTATACCCATTGCACTTACTGGTAGTGACATTCTTGCTAGGGCTAAGAATGGAACAGGAAAAACAGCTGCTTTTTGCATTCCTGCATTGGAAAAAATTGACCCGGATAACAATGTTATTCAAGTTGTTATACTGGTCCCAACACGAGAATTGGCCTTGCAAACATCTCAAGTGTGCAAAGAGTTGGGAAAACATTTGAAAATTCAAGTTATGGTTACAACAGGTGGTACCAGCCTGAAGGATGATATTATGCGGTTATATCAGCCAGTTCATTTACTAGTTGGAACACCAGGACGAATATTAGATCTTGCAAAGAAGGGTGTTTGTGTTTTGAAAGATTGCAATATGCTTGTTATGGATGAGGCTGATAAGCTGCTCTCCCCAGAGTTCCAGCCTTCAGTAGGGCAGTTGATTCATTTTCTGCCTACAAATCGTCAAATCTTGATGTTTTCAGCCACTTTTCCGGTCACTGTTAAGGACTTTAAAGATAGATATCTAAAAAAGACTTATGTTATTAACCTTATGGACGAGTTGACGTTGAAAGGTATCACACAATTCTATGCATTTGTCGAAGAGAGACAGAAAGTCCACTGCTTGAACACTCTTTTCTCTAAGCTGCAAATAAACCAGTCAATTATTTTCTGCAATTCAGTGAATCGAGTTGAGCTCCTTGCCAAGAAAATCACAGAACTTGGGTATTCATGTTTCTATATTCATGCAAAGATGTTGCAAGATCATCGCAATAGAGTATTTCATGATTTCCGCAATGGTGCATGTAGGAATCTTGTTTGTACTGATCTTTTTACTAGGGGAATAGACATTCAAGCTGTCAATGTTGTCATTAATTTTGATTTTCCAAAGAACTCAGAAACTTACCTGCACAGGGTTGGTCGATCAGGGAGGTTTGGGCACCTTGGTTTAGCTGTGAACTTGATTACTTATGAAGACCGCTTTAATTTATATAGGATTGAACAAGAACTTGGCACTGAAATAAAGCAAATCCCACCTCACATAGATCAGGCAATTTATTGCCGGTGA 1524 0.4154 MNNRARYPPGIGVGRGGVNSNAAFQPRPPHQQQYMQRHLVSQHQQYHHHHPQQQQQYQHHQQQQQNQHHHHQQQQWLRRTELGAADSNVVDEVEKTVQSEAVDPSSQDWKARLKMPPPDTRYKTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDPDNNVIQVVILVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLAKKGVCVLKDCNMLVMDEADKLLSPEFQPSVGQLIHFLPTNRQILMFSATFPVTVKDFKDRYLKKTYVINLMDELTLKGITQFYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAIYCR 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju05g2252 507 CDD DEADc_DDX6 135 335 - -
Alju05g2252 507 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 164 334 IPR014001 -
Alju05g2252 507 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 133 161 IPR014014 GO:0003724
Alju05g2252 507 FunFam ATP-dependent RNA helicase DDX6 114 337 - -
Alju05g2252 507 Gene3D - 338 507 IPR027417 -
Alju05g2252 507 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 280 288 IPR000629 -
Alju05g2252 507 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 52 506 - -
Alju05g2252 507 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 203 487 IPR027417 -
Alju05g2252 507 SMART helicmild6 384 465 IPR001650 -
Alju05g2252 507 Pfam DEAD/DEAH box helicase 158 322 IPR011545 GO:0003676|GO:0005524
Alju05g2252 507 Gene3D - 92 337 IPR027417 -
Alju05g2252 507 SMART ultradead3 152 348 IPR014001 -
Alju05g2252 507 FunFam ATP-dependent RNA helicase DDX6 338 507 - -
Alju05g2252 507 CDD SF2_C_DEAD 345 474 - -
Alju05g2252 507 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 344 504 IPR001650 -
Alju05g2252 507 MobiDBLite consensus disorder prediction 1 77 - -
Alju05g2252 507 MobiDBLite consensus disorder prediction 24 77 - -
Alju05g2252 507 Pfam Helicase conserved C-terminal domain 359 465 IPR001650 -
Alju05g2252 507 MobiDBLite consensus disorder prediction 94 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju05g2252 Alju-ChrAlju05 55851980 55857332 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju05g2252 133 504 Eukaryotic Initiation Factors Gene Family AT3G19760 37.433 1.41e-92 286