Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju05g2245 ATGGATCGAGGGGACCATATGGCGTTATCTGGGTCTGCATCGTACTATATGCAGAGAGGGCTAGCTGGTGCTGGAGCACAGCCTGAGTTACATGGTTCCCCTGGTATTCGTCCCCTGCAGAATCCCAATCTGCCATTTCAGCCTGGCATTGGAGGTGGTGGCGCCATTGGATCCACATTATCTGTGGAATCTTCAGCAATTTCACCTCATGGTGTCAATGTGGGTGCTCCTCCAGGTGCACCGCCGGGAGAACCTGTTAAAAGGAAGAGAGGAAGGCCTAGGAAATATGGTCCAGATGGAAGTGTATCATTGGCCTTGACTCCATCATCGTCTGGTCATCCCAGTGGAGCATTGACACAAAGCCAGAAGCGAGGCAGAGGCCGTCCTCCCGGATCTGGAAAGAAACAGCAGTTGGCATCTCTTGGTGAATTGATTTCTGGTTCAGCAGGGATGGGATTTACTCCTCATATCATCACCATTGCAGTTGGAGAAGACATTGCAACAAAAATAATGGCATTTTCTCAGCAAGGACCTAGAGCTGTATGCATTTTGTCGGCAAATGGTGCTGTCTCTAATGTGACGCTTCGACAGCCTTCAAGTTCGGGTGGCACTGTCACATACGAGGGGCGTTTTGAGATATTATGCCTATCAGGCTCTTATTTGCTCACTGAAAGTGGTGGCTCTCGCAATCGAACTGGTGGTCTCAGTGTTTCACTAGCTAGTCCTGATGGCCGTGTCATTGGTGGTGGGGTTGGTGGGTTGCTCATTGCAGCAAGTCCTGTTCAGGTGATAGTTGGGAGTTTCATATGGGGAGGATCAAAGACAAAGAGCAAGAAAAAGGAGGCTGCAGAAGAAGCAGAAGTAGCCATGGAATCAGATCATCAGCACCAGCATCATCATCATCATCATCATCATCATCATCAACAACATCAAGCGGTTCATAATCCACCAGCATTGAGCAGCATATCGCCGAATCAAAATCTCACCCAAGCTTCATCTATGAGTTCGTGGCCGGCTGCTTCTCGTCAATTGGACATGCGTAATTCCCATGTTGACATTGATTTAATGCGTGGGTGA 1077 0.4884 MDRGDHMALSGSASYYMQRGLAGAGAQPELHGSPGIRPLQNPNLPFQPGIGGGGAIGSTLSVESSAISPHGVNVGAPPGAPPGEPVKRKRGRPRKYGPDGSVSLALTPSSSGHPSGALTQSQKRGRGRPPGSGKKQQLASLGELISGSAGMGFTPHIITIAVGEDIATKIMAFSQQGPRAVCILSANGAVSNVTLRQPSSSGGTVTYEGRFEILCLSGSYLLTESGGSRNRTGGLSVSLASPDGRVIGGGVGGLLIAASPVQVIVGSFIWGGSKTKSKKKEAAEEAEVAMESDHQHQHHHHHHHHHHQQHQAVHNPPALSSISPNQNLTQASSMSSWPAASRQLDMRNSHVDIDLMRG 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju05g2245 358 MobiDBLite consensus disorder prediction 24 138 - -
Alju05g2245 358 MobiDBLite consensus disorder prediction 313 343 - -
Alju05g2245 358 MobiDBLite consensus disorder prediction 296 311 - -
Alju05g2245 358 SUPERFAMILY AF0104/ALDC/Ptd012-like 153 270 - -
Alju05g2245 358 CDD DUF296 154 268 IPR005175 -
Alju05g2245 358 MobiDBLite consensus disorder prediction 275 295 - -
Alju05g2245 358 FunFam AT-hook motif nuclear-localized protein 1-like 155 286 - -
Alju05g2245 358 ProSiteProfiles PPC domain profile profile. 149 289 IPR005175 -
Alju05g2245 358 SMART AT_hook_2 123 135 IPR017956 GO:0003677
Alju05g2245 358 SMART AT_hook_2 87 99 IPR017956 GO:0003677
Alju05g2245 358 Gene3D - 155 300 - -
Alju05g2245 358 MobiDBLite consensus disorder prediction 103 126 - -
Alju05g2245 358 Pfam Plants and Prokaryotes Conserved (PCC) domain 155 268 IPR005175 -
Alju05g2245 358 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 72 326 IPR039605 GO:0003680
Alju05g2245 358 MobiDBLite consensus disorder prediction 275 343 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju05g2245 Alju-ChrAlju05 55792826 55796523 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju05g2245 1 358 AT-hook Motif Nuclear Localized (AHL) Family AT3G61310 50.670 3.88e-91 275