Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju05g2208 ATGGGAGGTTGCTGCTGTTCTGCCAGAAAACCTCATCTGCATGGTACAGCAGTGTATTATTATTGCCCGCCAGCTTTGGAAGAGCGGGAGTCATTAACCTCAAATGACGGTACAGCAGCTTCACTTGGTGCTGGATTGCTAGCAAGTTCGAACTTGGAAACATCCACACCAGATACATACCAGCCCCCTCCTGCACCTTTGCCATATGATGTGGTCTTTGGTCCAATATCAACAGATTCTGAATCTGGAAGAAAAACTGTTAGTGGTAGTAGTTTTGAAACATTGATTACATGTGAAGATCTTGAAGAATTGGATTGCAAAGCTCAAGTAAATTCTGATCTTTTGTCTCCAAAGAAGAAAGAACTATCAAAAGCAAATGAATGTCATTTATCAATGACAGAAGAAGAAGAAGCCTGCCCAATTTGTCTTGAAGAATATGAGGTTGAGAATCCTAAAACTCTGACAAAGTGTGAACACCATTTTCACCTATCTTGCATTCTTGAGTGGATGGAAAGAAGTGACACCTGTCCTATATGTGATCAGGAGATGATATTTGAGTAG 561 0.4082 MGGCCCSARKPHLHGTAVYYYCPPALEERESLTSNDGTAASLGAGLLASSNLETSTPDTYQPPPAPLPYDVVFGPISTDSESGRKTVSGSSFETLITCEDLEELDCKAQVNSDLLSPKKKELSKANECHLSMTEEEEACPICLEEYEVENPKTLTKCEHHFHLSCILEWMERSDTCPICDQEMIFE 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju05g2208 186 SMART ring_2 139 179 IPR001841 -
Alju05g2208 186 SUPERFAMILY RING/U-box 133 184 - -
Alju05g2208 186 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 132 186 IPR013083 -
Alju05g2208 186 FunFam Putative E3 ubiquitin-protein ligase RHB1A 115 184 - -
Alju05g2208 186 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 38 185 - -
Alju05g2208 186 Pfam Ring finger domain 138 179 IPR001841 -
Alju05g2208 186 ProSiteProfiles Zinc finger RING-type profile. 139 180 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju05g2208 Alju-ChrAlju05 55509365 55511443 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju05g2208 1 186 C3H Transcription Factor Family AT4G00335 56.684 2.73e-71 212