Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju05g2205 ATGACCGGATCAAGGTTTTCCTATCTGAAATGTCTCCAGAAATATTCTGCTAAGGGTTCCTTTAACGTGGAATTAGTTCAGCCAAATCAACGTATTATGAACCTTACAAGATCTTTGGATTGCGTTCATTTAAGATTTCTGAGTACTTCATTTAGTCGAGCTTATTCCAAAAGAGAGTTACAGTTACATGAAATTTTTGCCAAGAACCAGTTTAGAACGATGACTTCTGGAAACAGCAACCTCTTCACCAAACCCGGGGCTTCTTTTTCTCCCAATTCTTCTAGTTTTTTCTTCCATAAAGCTTTCCCTTTTGCTTCACCTTCAATGACTCTCTTGTTGAACCATCGACCATATTCATCATCTCTGGGCGGCAATGGAAGTAGAGATGGGAGCCCTGATTTTCCATCTGATTCTGGGGCAAGTGACATGAATGCCAGCATTGATTCTATTGGTACGAGTGATTGGGCTGATAAAATCAAAGATGTTTGGCAGAGTGCAGTAGAGACAGTAACATATTCTGCACAAAAGGTTAAAGAAGCCTCTGATGAGCTGACTCCACATGCTCAACAGTTGCTCGACTCACATCCATACCTTAAAGATGTGGTAATTCCAGTTGGTGGTACGTTTACTGCCACACTAATAGCCTGGATTGTGATGCCTCAGATTTTAAGAAAATTTCACAAATATGCAATGCAAGGTCCTATGGCAGTATTTCCAGGAAGCACCTCTGAGAAGCATGTTCCTTATGAGAAAAGTATATGGGGTGCTTTGGAAGATCCAGTGCGATATTTGGTTACCTTCATGGCATTCTCACAGATTGGTGTACTGGTAGCTCCAACAACTGTGGCCTCACAATACCTTACACAGTCTTGGAGGGGGGCAGTGATCCTCTCATTTGTGTGGTTTTTGTATCGATGGAAAACAAATGTCTGGGCTCGTATTTTGTCAGGTCAAAATTTACTCGGGCTTGATCGAGATAAATTGCTCGCTCTAGACAAAATATCATCTGTGGGGCTATTTGTGATTGGTATAATGGCTTTAGCTGAGGCTTGTGGAGTGGCTGTACAGTCTATTATAACTGTTGGTGGTATAGGAGGAGTTGCCACTGCTTTTGCTGCTAGAGACATACTTGGAAATGTATTCAGTGGGTTGTCTATGCAATTTTCGAAGCCCTTTACAGTTGGAGATACGATAAAAGCTGGATCGGTAGAGGGTCAGGTGGTGGAAATGGGACTTACTACTACATCATTGCTGAATGCTGAGAAGTTCCCAGTTATAGTGCCAAACTCACTTTTCTCTAGCCAGGTAATAGTGAACAAGTCTCGTGCTGAATGCCGTGCCATCGTATCTAAAATTCCTCTCCGAATTGAGGATATAAGTAAAATTCCCAAGATATCAGATGACATCAAGACAATGCTAAGAACAGATCCTGTGGTTTTCTTAGGGAAAGAGGTTCCTTACTGTTACATGTCGCGCATCGAAAGTTCATATGCAGAATTGACCATTGGATACAACCTCAAACACATGCGTAAAGATGAGTTGTACTCTGCAGAACAAGATATTCTGCTACAGGTGGCCCAGATTATTAAGACGCATGGTGCTGAACTTGGCAATACCTGGCAAAACATGCCTTAA 1635 0.419 MTGSRFSYLKCLQKYSAKGSFNVELVQPNQRIMNLTRSLDCVHLRFLSTSFSRAYSKRELQLHEIFAKNQFRTMTSGNSNLFTKPGASFSPNSSSFFFHKAFPFASPSMTLLLNHRPYSSSLGGNGSRDGSPDFPSDSGASDMNASIDSIGTSDWADKIKDVWQSAVETVTYSAQKVKEASDELTPHAQQLLDSHPYLKDVVIPVGGTFTATLIAWIVMPQILRKFHKYAMQGPMAVFPGSTSEKHVPYEKSIWGALEDPVRYLVTFMAFSQIGVLVAPTTVASQYLTQSWRGAVILSFVWFLYRWKTNVWARILSGQNLLGLDRDKLLALDKISSVGLFVIGIMALAEACGVAVQSIITVGGIGGVATAFAARDILGNVFSGLSMQFSKPFTVGDTIKAGSVEGQVVEMGLTTTSLLNAEKFPVIVPNSLFSSQVIVNKSRAECRAIVSKIPLRIEDISKIPKISDDIKTMLRTDPVVFLGKEVPYCYMSRIESSYAELTIGYNLKHMRKDELYSAEQDILLQVAQIIKTHGAELGNTWQNMP 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju05g2205 544 Gene3D - 391 439 IPR023408 -
Alju05g2205 544 SUPERFAMILY Sm-like ribonucleoproteins 375 440 IPR010920 -
Alju05g2205 544 MobiDBLite consensus disorder prediction 122 142 - -
Alju05g2205 544 Pfam Mechanosensitive ion channel 333 535 IPR006685 GO:0016020|GO:0055085
Alju05g2205 544 SUPERFAMILY Mechanosensitive channel protein MscS (YggB), transmembrane region 287 374 IPR011014 GO:0016020
Alju05g2205 544 PANTHER YNAI-RELATED MECHANOSENSITIVE ION CHANNEL 155 539 - -
Alju05g2205 544 Gene3D - 286 390 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju05g2205 Alju-ChrAlju05 55477395 55480929 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju05g2205 72 542 Mechanosensitive Ion Channel Family AT4G00290 60.504 0.0 574