Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju05g2204 ATGTCTCGGGCCAGAGTGAGGTTTTCCTGTCTGAAACGTCTCCAGAAATTTTCAGCCAAGTGTTGTTTAAACTTGAAGCCAACTCAACCAATAAAGCACCATATTATGAACCCTACAAGGCGTGAGGATTTTGTTCATGTAAAGCTTCCCATTAATTCACCGAGTCAATCTTATTACAAAGGAGAGCTACAGTTACCTGTAATATTTACCAAGAAGCGGTTCAGAACTAAAACTTCAGAAAACAGCAACCTCTTGAATACCAAACCCAGCGCATCATTATCTCCTAACATGTCCAGATTTTGCCTCCATCAAAAGTCTCTTCCTTTTGCTTCAATGACCCTTATGTTGAAACATCGATCATATTCATCATATCTGAGTGATTCCACAGATATAAGTGACTGGGCTGCTGATCTGACTCCATGTGTTCAACAGTTGCTTGACTCAAACCCATTCCTGGTTATCTCAGTTGGTTCCACTCTAATAGCTTGGATTGTGATGCCTCTGATTCTGAGGAAATTTCACCAATATTCAATGCAAAGTTCTGCAGCAGCAGCAATTCCTTATGAGAAAACCTTTTGGGTTGCTTTGGAGGATCCAGTGAGATATTTGGTTACCTTTGTGTCATTCTCACACATTTGTGTGATGGTAGCTCCAAGAAGTGAAGCCTCACAGCACCTTGCAGAGTCTTGGAAGGAGGCAGTGATCTTATTATTTACGTGGTTTTTGCATCGATGGAAAACAAATATCTTGGAACACATTTCTTCCCATCAAAGTTCGCCTGGGCAAGATCAACATAAATTGCTTAATCTACAAAATGTCTCATCTGCTTCTGTATTTGGGATTGGTGGTACCATGGCTTTGACCCAGGCTGGTGCTGTCTCTGTTGAATCTGTTATAATTGTTGGCGGAATGGGAGGTGCTGCCACTGCTTTTGCGGCCAGAGACGTTTTTGCCAATGTGTTCAGTGGACTGTGTATGCAGTTGTCGGAGCCTTTTACAATCGGCGATACAATTAAAGCAGGGTGGGTAGAAGGACAGGTGATAGAAATGGGAGTGACAAAAACATCATTGGTGAACGGTGAGAAAATGGAAGTGGTAGTGCCCAACTCATATTTTACCAAGCAGGTAATAGTAATAAAGTGTCGAGCTGAATGGCGGGGCACGATATCTAAAATCCCAGTGAGGATTGAAGCCATTGATAGAATTGGCAAGATATCACAAGAGATGAAGAGCATGCTCACAGCAAATGGTAATGTGTTGTTGGGAAAAAGAGCCCCTTACTGTTACTTGTCGCGCATTGAAACCTCACACGCACAGGTGACTCTTGGCTACAACCTCAAACTCATGGGGAAAGAAGCGACGTGTTTGGCAAAACAAGGTATAATGAAGGAGGCAATGGACATTCTCAAGAGGCATAATGCTGCTCATCTCTCCTCTGATTTTGACTCTGACTAA 1455 0.4261 MSRARVRFSCLKRLQKFSAKCCLNLKPTQPIKHHIMNPTRREDFVHVKLPINSPSQSYYKGELQLPVIFTKKRFRTKTSENSNLLNTKPSASLSPNMSRFCLHQKSLPFASMTLMLKHRSYSSYLSDSTDISDWAADLTPCVQQLLDSNPFLVISVGSTLIAWIVMPLILRKFHQYSMQSSAAAAIPYEKTFWVALEDPVRYLVTFVSFSHICVMVAPRSEASQHLAESWKEAVILLFTWFLHRWKTNILEHISSHQSSPGQDQHKLLNLQNVSSASVFGIGGTMALTQAGAVSVESVIIVGGMGGAATAFAARDVFANVFSGLCMQLSEPFTIGDTIKAGWVEGQVIEMGVTKTSLVNGEKMEVVVPNSYFTKQVIVIKCRAEWRGTISKIPVRIEAIDRIGKISQEMKSMLTANGNVLLGKRAPYCYLSRIETSHAQVTLGYNLKLMGKEATCLAKQGIMKEAMDILKRHNAAHLSSDFDSD 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju05g2204 484 PANTHER YNAI-RELATED MECHANOSENSITIVE ION CHANNEL 144 478 - -
Alju05g2204 484 Gene3D - 231 328 - -
Alju05g2204 484 Pfam Mechanosensitive ion channel 274 474 IPR006685 GO:0016020|GO:0055085
Alju05g2204 484 SUPERFAMILY Sm-like ribonucleoproteins 315 377 IPR010920 -
Alju05g2204 484 SUPERFAMILY Mechanosensitive channel protein MscS (YggB), transmembrane region 231 314 IPR011014 GO:0016020
Alju05g2204 484 Gene3D - 331 378 IPR023408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju05g2204 Alju-ChrAlju05 55472183 55475216 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju05g2204 130 475 Mechanosensitive Ion Channel Family AT4G00290 52.909 1.04e-128 381