Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju05g2203 ATGAACCTTGCAATATATCCTGATCGCATTATTCATGCAACCATTCCTTGCAATTCATTGACTCAAGTCTATTCCAAAGGAGAGTTTATACAGTCCTCTGAAATTTTTTCCAAGAATCAATGGAGAACTTTGTCTTCTGAAAACAAAAACCTCTCTAATACCAAACCCAATGCTTCTTTCTCTCCTAAATTTCCCATTTTCATTTGTTCCCATAATTCTCTTCCTTCTGCTTCAAAGACCCACTTGTTACCATCTTTGAATAACACTGATTTTCCATCTGATTGGGCTAATAAATTCAAAGATGCTTGGAAGATTGCAGTAGAACAGATTGAAGAAGCCTCTGGCGAGCTTAGTCTCTATGTTCGAAAGGGTTCTTTGGAGGATCCTGTGCGATATTTGGTTACCTTCATGACATTCTCACAAATTTGCGTAATGGTGGCTCCAAAAACTTTAGCCTCACACCTTGCACAGGCTTGGAGGGGTGCGGTGATCCTTTCATTTGTGTGGTTTTTGCATCAGTGGAAAACAAATACTTTAGGGCACATTTCGTCTGCTCAAAGTTTACTTGGGCTTGGTCAAGATAAATTGCTTGCTCTAGACAAAGTCTCATCTGTTGGTCTATTTGTGATTGGTATAATGGCTTTGGCTAAGGCTTGTGGTGTCGCTGTACAATCTATTGTAACTGTTGGTGGTATAGGAGGAGTTGCCACTGCTTTTGCAACCAAGGACATTCTTGGCAATGTATTTAGTGGCCTGTCTATGCAGTTTTCAGAGCCCTTTACAGTTGGAGATATAATCAAAGCTGGCACAGTAGAGGGTGAAGTGGTGGAAATGGGACTTACAACTACATCATTGCTGAATTCTGAGAAGTTCCCTGTTGTAGTGCCAAACTCACTTTTTTCCAGCCAGGTGATAGTGAATAAGTCTCGTGCTGAATATTGCGCCATCACATCTAAAATTCCGTTGGGGATTGGTGATTTGAGTAGAATTCCGAGGATATCAGATGATATAAAGAGCATGCTTAAAACAAAGGAAATGGTTTTCTTAGGGAAAGAGGCTCCTTACTGTTATCTGTCACGCATTGAAAGTTCATTTGCACAATTGACTATTGGATACAACATCAAGTACATGAGCAAAGATGAGATGTATAGTGCAGAACAAGATATACTGCTGGAAGTAGTTGACATTATTAAGAAGCATGGTGGTGAACTTGGCCACCCTTGGCGTCACATGTCTTATCATTCCGAGTAA 1251 0.4029 MNLAIYPDRIIHATIPCNSLTQVYSKGEFIQSSEIFSKNQWRTLSSENKNLSNTKPNASFSPKFPIFICSHNSLPSASKTHLLPSLNNTDFPSDWANKFKDAWKIAVEQIEEASGELSLYVRKGSLEDPVRYLVTFMTFSQICVMVAPKTLASHLAQAWRGAVILSFVWFLHQWKTNTLGHISSAQSLLGLGQDKLLALDKVSSVGLFVIGIMALAKACGVAVQSIVTVGGIGGVATAFATKDILGNVFSGLSMQFSEPFTVGDIIKAGTVEGEVVEMGLTTTSLLNSEKFPVVVPNSLFSSQVIVNKSRAEYCAITSKIPLGIGDLSRIPRISDDIKSMLKTKEMVFLGKEAPYCYLSRIESSFAQLTIGYNIKYMSKDEMYSAEQDILLEVVDIIKKHGGELGHPWRHMSYHSE 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju05g2203 416 Gene3D - 259 307 IPR023408 -
Alju05g2203 416 SUPERFAMILY Sm-like ribonucleoproteins 243 308 IPR010920 -
Alju05g2203 416 Gene3D - 156 257 - -
Alju05g2203 416 PANTHER YNAI-RELATED MECHANOSENSITIVE ION CHANNEL 124 412 - -
Alju05g2203 416 Pfam Mechanosensitive ion channel 201 401 IPR006685 GO:0016020|GO:0055085
Alju05g2203 416 SUPERFAMILY Mechanosensitive channel protein MscS (YggB), transmembrane region 158 242 IPR011014 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju05g2203 Alju-ChrAlju05 55467737 55470417 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju05g2203 124 408 Mechanosensitive Ion Channel Family AT4G00290 67.832 5.95e-138 402