Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju05g2169 ATGGCAACCAAATTATATGATCAGAGAACCATCACAAGCAAGCTTGTGAGAAATTTGTGCTTTCCCGGTGTCACACCAAGAGTCGTTCGGATTTCCGTCTCTGACAACTATGCTACTGATTCTTCCAGTGACGAAGAAGACCAGAGAGGAGGACGATTTTCTCGCCCAGTTAAGAAGTTCGTCCATGAGATCAGAATCGAAGACTTCTCGAGTCTCAGAGCTAATAGAAGGGAAGTTAACGGTGATTCCAGGCCCATTTTGAAGAAGAAGAAGAGGGAAAGGCCACCTACGAGAATGGCCAGGAGGAAACAGAGCCTGCCCGACGGGAAGAAGTTTCGCGGCGTCCGGCAGAGACTGTGGGGCCGGTGGGCGGCGGAGATCCGAGACCCGATTCTGGGAGCACGGAAGTGGCTGGGCACGTTTGACACGGCGGAGGAAGCAGCTCTTGTGTACGACATAGAAGCCATTCGTCTCAGAGGAGCCGATGCTCAGACAAATCTAATCAAACCGCCAGAGAAACACGAATCTATAATGCTAACATCAATTAATCACGAATCCCGAGGATCAGTGAAAAGTCCTCTAAAGATGAAGAGCGAGTGGTTCGAAAACGAGTGTGTCTACGATTCAAGCAGAGAGTCTCGCGATTTATTATGGTCTTCGTCTTCTTCGCCGACTTCTGTTCTTAGATACAGCGCGGGAGGGTCTTGTGAGCCTTCAGAGTGGGCAGGCATAGAAGAATCCAGAGAAGGAGAAAAGTTCTTGTTCCCAGATTCATCATCATCAGAATTTGTATCCTGTTGTTATTCAGATTACGAAACTCCTCTTAGCCCTCCGTTGTTTTTTGAATCTGATGTGCCTCAACTCATTTCTAGCGAGATTTTGAGGGACATTCCATTTCAACTTGATGATGATTTTGAATCTTCCAAGTGGGTCGTTGATCATTACTTCCAGGCTGATTAA 960 0.4729 MATKLYDQRTITSKLVRNLCFPGVTPRVVRISVSDNYATDSSSDEEDQRGGRFSRPVKKFVHEIRIEDFSSLRANRREVNGDSRPILKKKKRERPPTRMARRKQSLPDGKKFRGVRQRLWGRWAAEIRDPILGARKWLGTFDTAEEAALVYDIEAIRLRGADAQTNLIKPPEKHESIMLTSINHESRGSVKSPLKMKSEWFENECVYDSSRESRDLLWSSSSSPTSVLRYSAGGSCEPSEWAGIEESREGEKFLFPDSSSSEFVSCCYSDYETPLSPPLFFESDVPQLISSEILRDIPFQLDDDFESSKWVVDHYFQAD 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju05g2169 319 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 25 237 - -
Alju05g2169 319 FunFam Ethylene-responsive transcription factor 2 110 169 - -
Alju05g2169 319 Gene3D AP2/ERF domain 110 168 IPR036955 GO:0003700|GO:0006355
Alju05g2169 319 PRINTS Ethylene responsive element binding protein signature 112 123 IPR001471 GO:0003700|GO:0006355
Alju05g2169 319 PRINTS Ethylene responsive element binding protein signature 134 150 IPR001471 GO:0003700|GO:0006355
Alju05g2169 319 MobiDBLite consensus disorder prediction 80 108 - -
Alju05g2169 319 ProSiteProfiles AP2/ERF domain profile. 111 168 IPR001471 GO:0003700|GO:0006355
Alju05g2169 319 Pfam AP2 domain 111 160 IPR001471 GO:0003700|GO:0006355
Alju05g2169 319 SUPERFAMILY DNA-binding domain 111 167 IPR016177 GO:0003677
Alju05g2169 319 CDD AP2 110 166 IPR001471 GO:0003700|GO:0006355
Alju05g2169 319 SMART rav1_2 111 174 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju05g2169 Alju-ChrAlju05 54946486 54947445 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju05g2169 27 238 AP2-EREBP Transcription Factor Family AT4G27950 44.131 7.32e-34 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Alju05g2169 AP2 5.1e-10 CL0081