Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju05g2149 ATGGCTGATTCTGGTGACCTGCCGAAATCTACTGAAAATCAACAATCCGAGCAAGTGTGTAATTTCTTCAAGAAACCAGTTAATAAGAAGAATTTAAGAAAACGTACTGTTGATGAAGAAGATAACGAGGAGGATTCAAAAAATGAAGGCTCTTTGTTACACATTCAGAAAAAACAGGTGAAGCCTGACAATAAGTTGTACTTTTCCACTGGTCCCTCAAAAAGCACTACATCTAAAGTACAAGAGGAGCCTGAAAAGCAACTGTTTCATTTCGAGTCTTCAAAAGAGATTCAAGTTCAACATGATAACAAAGCAACAGCCATTCTTGAGACTGAAACTGAGTTTTCAAAAGATGCTCGAGCTATTCGTGAAAGAGCCCTTAAGCAAGCAGAGGAGAGTTTGAAGGGTAAAGGCACTAGTTCTAGAGAAGAAAAATTGTACAAGGGCATCAATAGTTACAAAGATTACAAGGCTGGCTTTCGTCGGGAGCAAACAATTGCTAGTGAAAAAGCTGGTGGGGCACATGGTCCTCTTAGGGCATCAGCTCACATAAGAGTTTCAGCAAGATTTGACTATCAGCCAGACATATGCAAGGATTACAAGGAGACCGGCTACTGTGGTTATGGTGACTCGTGCAAGTTCATGCATGATCGAGGAGATTACAAGTCAGGGTGGCAATTGGAGAAGGAATGGGAGGAAGCTGAGAAAGCTAGGAGAATGAGATTGGCTGCAGGAGAGGATTCAGATGAGGAGGGTGCCAATTTGAGTGATGAAGATGATGATGATTCATTACCATTTGCATGTTTCATTTGTAGGAAGCCCTTTGTAGATCCTGTTGTGACAAACTGCAAGCATTACTTCTGCGAGCATTGTGCGTTGAAGCATCATGCAAAGAATAAGAAATGTTTTGTGTGCAACAAGCCTACTCTTGGCATTTTTAATGCAGCTCATGAGATACGCAAGAAGATGGCTGCAGAGGGTAAATAA 987 0.4144 MADSGDLPKSTENQQSEQVCNFFKKPVNKKNLRKRTVDEEDNEEDSKNEGSLLHIQKKQVKPDNKLYFSTGPSKSTTSKVQEEPEKQLFHFESSKEIQVQHDNKATAILETETEFSKDARAIRERALKQAEESLKGKGTSSREEKLYKGINSYKDYKAGFRREQTIASEKAGGAHGPLRASAHIRVSARFDYQPDICKDYKETGYCGYGDSCKFMHDRGDYKSGWQLEKEWEEAEKARRMRLAAGEDSDEEGANLSDEDDDDSLPFACFICRKPFVDPVVTNCKHYFCEHCALKHHAKNKKCFVCNKPTLGIFNAAHEIRKKMAAEGK 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju05g2149 328 PANTHER ZINC FINGER PROTEIN 183 15 326 IPR039971 -
Alju05g2149 328 SUPERFAMILY RING/U-box 267 310 - -
Alju05g2149 328 Pfam Zinc finger, C3HC4 type (RING finger) 267 309 - -
Alju05g2149 328 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 266 325 IPR013083 -
Alju05g2149 328 FunFam Zinc finger CCCH domain-containing protein 1 189 223 - -
Alju05g2149 328 Coils Coil 29 49 - -
Alju05g2149 328 ProSiteProfiles Zinc finger RING-type profile. 268 306 IPR001841 -
Alju05g2149 328 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 192 217 IPR000571 GO:0046872
Alju05g2149 328 MobiDBLite consensus disorder prediction 7 22 - -
Alju05g2149 328 SUPERFAMILY CCCH zinc finger 190 222 IPR036855 GO:0046872
Alju05g2149 328 ProSitePatterns Zinc finger RING-type signature. 283 292 IPR017907 -
Alju05g2149 328 FunFam RING finger protein 113A 266 325 - -
Alju05g2149 328 MobiDBLite consensus disorder prediction 1 83 - -
Alju05g2149 328 CDD RING-HC_RNF113A_B 264 314 - -
Alju05g2149 328 MobiDBLite consensus disorder prediction 32 61 - -
Alju05g2149 328 MobiDBLite consensus disorder prediction 240 259 - -
Alju05g2149 328 Gene3D - 189 223 - -
Alju05g2149 328 SMART ring_2 268 305 IPR001841 -
Alju05g2149 328 SMART c3hfinal6 191 218 IPR000571 GO:0046872
Alju05g2149 328 ProSiteProfiles Zinc finger C3H1-type profile. 191 219 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju05g2149 Alju-ChrAlju05 54754750 54756655 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju05g2149 1 326 C2H2 Transcription Factor Family AT1G01350 67.262 3.14e-169 472
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Alju05g2149 zf-C3HC4_3 1.7e-08 CL0229