Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju05g2140 ATGGATGCAAGGTCAGAAAAAATTGTGAGGTTTAAGGACTGGAGTTCAGAATCACATTTCAATGTTCAGAAAACAATTTCTTCTGATGATGGATATCCTGAGAGAAAAGTTAGATCACGACCAAGAGATGTGTTTAGCAACATTAGAAGAGGAATCCAAAGAAGTTTTGAGAAGATTAAAAACTTGAGAAAACCAGCAAATGTGCATCCAGTAAGCGATTCAAATCCCAAGATATCGGCTTCAAAGATGAAGATTCTTGATCCACAGGGGTCTTTCCTTCAGAAATGGAACAAAATATTTGTGATAGCATGTGTACTAGCAGTATCTGTGGATCCTCTGTTCTTTTACGTGCCAGTTATTGATAACAGCAAAAAATGCCTTTGTCTGAACAAACCATTGCAGATTACTGCCAGTGTTCTTCGTACATTCTTTGACCTGTTCTACATTGTGCACATAGCATTTCAGTTTCGAACGGGTTTTATCGCCCCTTCTTCTCGAGTTTTCGGTAGGGGAGAGCTCATTGATGATCCTCAGGCTATTGCAAAAAGATACTTATCTTCATACTTCATCATTGACATCCTATCAATTATTCCACTTCCACAGGCGTTTGTTTTGGCAATGAGACATTCAGTCCCATCTGAAGAAAAGGACTGGTTAAAATATGCAATATTAATCCAATTTGTCCCCAGATTTCTTCGGATCTATCCATTATTCACAGAAGTAACTAGAACTTCTGGCATACTGACTGAGACAGCTTGGGCTGGTGCTGCTTATAATCTCTTTCTCTATATGCTAGCAAGTCACGTGGTTGGAGCTTTCTGGTACCTGTTTTCAGTAGAATCAGAGCTTCGGTGCTGGCACAGAGAATTGAGGAATGCTAGTTTGCCTACATACATAAGCTGTCAATACCTGACAAATCCAAATGTCACAACACTTCTCAATCATTCTTGTCCCTTCAAGGATCCTGACGAAATTGAAGACCCCAAAGTCTTCAATTTTGGAATATATATCGACGCTTTAAAATATCATGTGGTGGAATCAACCATGGATTTCCCTCAAAAGATATTCTTCTGCTTTTGGTGGGGTCTGCGAAATGTAAGTTCTCTGGGACAAAATCTCAAGACAAGTACATACGTTGGGGAGATCATCTTTGCTTGCCTCATTGCAATCTTTGGGTTGGTTTTGTTCTCATTACTCATTGGAAACATGCAGAAATATCTACAATCTGTAACTGTTAGAGTTGAAGAAATGAGAATCAAGAGGAGGGATGCAGAGCGGTGGATGTCGCACCGTATGCTACCAGAGCACTTGAGGGAAAGAATCAGACGCTATGAGCATTACAAGTGGCAAGAAAACAGAGGTGTGGATGAGGAAACATTAATCCACAATCTTCCTAAAGATCTCAGAAGAGACATAAAGCATCACCTTTGCTTGGATTTACTTAAAAAAGTGCCAATGTTTGAGACAATGGATGAGCAGTTGTTGGATGCGCTTTGTGATGGGATGAAGCCAGTACTTTATACAGAGAAGAGTGCTATTATTCGCGAAGGAGATCCAGTGGATCAAATGCTATTCATTATGCGAGGAAACCTTGCAACTATGACCACAAATGGTGGAAGAACAGGTTTCTTCAACTCTTTTGTTATCAAGGCAGGTGATTTCTGTGGAGAGGAGCTTTTAACATGGGCCTTGGACCCCAACTCATCCTCAAATCTTCCCATTTCAACCAGAACAGTAGAATCTCTGTCAGAAGTTGAAGCCTTCGCTCTCATGGCTAATGACTTGAAGCTTGTTGCTTCCCAATTTCGACGCCTTCACAACAAATACATCCAGCACACTTTCAGGTACTATTCCTTGCAATGGAGGACATGGGCTGCCTGTTTCATACAAGTAGCTTGGCGTCGCCACTGTAAAAGGAAGATTGAGAAATCTTTACGTGAAGCGGAAGACAGGCTGCAAGATGCTTTGGCAAAAGAGGAAGGTTCTTCTGTAAGTTTTGGTGCCACCATATATGCAGCAAGGTTTGCTGCCAATGCGTTACGCGGCCTGAGGAAAAATAATGGGGAGCGAAAGAACAACAGAATGCCTCAGAGGTTGCTTCCTCTGCTGCCTCAGAAGCCAACTGAGCCTGATTTCACTACACAAGCTTCAGGAGTATCTTAG 2163 0.4156 MDARSEKIVRFKDWSSESHFNVQKTISSDDGYPERKVRSRPRDVFSNIRRGIQRSFEKIKNLRKPANVHPVSDSNPKISASKMKILDPQGSFLQKWNKIFVIACVLAVSVDPLFFYVPVIDNSKKCLCLNKPLQITASVLRTFFDLFYIVHIAFQFRTGFIAPSSRVFGRGELIDDPQAIAKRYLSSYFIIDILSIIPLPQAFVLAMRHSVPSEEKDWLKYAILIQFVPRFLRIYPLFTEVTRTSGILTETAWAGAAYNLFLYMLASHVVGAFWYLFSVESELRCWHRELRNASLPTYISCQYLTNPNVTTLLNHSCPFKDPDEIEDPKVFNFGIYIDALKYHVVESTMDFPQKIFFCFWWGLRNVSSLGQNLKTSTYVGEIIFACLIAIFGLVLFSLLIGNMQKYLQSVTVRVEEMRIKRRDAERWMSHRMLPEHLRERIRRYEHYKWQENRGVDEETLIHNLPKDLRRDIKHHLCLDLLKKVPMFETMDEQLLDALCDGMKPVLYTEKSAIIREGDPVDQMLFIMRGNLATMTTNGGRTGFFNSFVIKAGDFCGEELLTWALDPNSSSNLPISTRTVESLSEVEAFALMANDLKLVASQFRRLHNKYIQHTFRYYSLQWRTWAACFIQVAWRRHCKRKIEKSLREAEDRLQDALAKEEGSSVSFGATIYAARFAANALRGLRKNNGERKNNRMPQRLLPLLPQKPTEPDFTTQASGVS 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju05g2140 720 SUPERFAMILY cAMP-binding domain-like 415 612 IPR018490 -
Alju05g2140 720 Pfam Ion transport protein 96 414 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Alju05g2140 720 Gene3D Jelly Rolls 484 604 IPR014710 -
Alju05g2140 720 SMART cnmp_10 486 617 IPR000595 -
Alju05g2140 720 Gene3D Helix hairpin bin 413 477 - -
Alju05g2140 720 ProSiteProfiles cAMP/cGMP binding motif profile. 486 570 IPR000595 -
Alju05g2140 720 Coils Coil 638 658 - -
Alju05g2140 720 MobiDBLite consensus disorder prediction 685 720 - -
Alju05g2140 720 CDD CAP_ED 486 617 IPR000595 -
Alju05g2140 720 FunFam Cyclic nucleotide-gated ion channel 1 484 602 - -
Alju05g2140 720 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 71 712 - -
Alju05g2140 720 SUPERFAMILY Voltage-gated potassium channels 87 408 - -
Alju05g2140 720 FunFam Cyclic nucleotide-gated ion channel 1 413 477 - -
Alju05g2140 720 Gene3D - 98 412 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju05g2140 Alju-ChrAlju05 54680303 54684620 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju05g2140 1 714 Ion Channels AT5G53130 63.411 0.0 911