Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju05g2131 ATGGCTTCTTATATTGCTTCATGTTTAAATCTAAGTCTTGTTTTTTCTAGAGAGATAGCGATTTCATGTCTAATTGAACACCCTGTTAGGCTCCGCATCTGTCAATTCCAAGTGATATTTCTTGGGTTAAATCGTTGCCTGGTTGTTGCTTCATTGTTCAATTTGGACGGTTTTTGCGTTCAATTTCTGGGGATTTGTGCTGCTGATGGGGCGCGGATCTTGAAGCTGAATTGGACTGGTGCTGAATGGATTAATGCTCGGCTTTGGAGTTCTGTTCCTGACTTGTTGGACTTATGGCTATGGTACATAGATGAGAAAACTAGTTCTTTTGTCGTAAAGAGTTTCATAGTACACTTCTTGGCATCGGATAGTCCCAGGATGATAATTAAGCGGGCAGTGAAATTTGAAATTCCGAATCTGAAACGATGCCAATTAGAGGAGCTCGATCCTGAAGATAGTACGTGTGCGACGAATCCCAAGAAACGGATGGCAAATGGTTTTTTATCTACTGGTATGGCCGCTGAGGATGAATATTTGGGCAGCAATTCTGGATTTCTTTGCAGTAAAGAATCGCATTGCGGTGGTGACTTACTGTCAAGCTCAGATTCCATGAAGTCGGATGCTAAAACAGTACTAAAACCGGGCTCAAAAAAGGTTCGGCCTCCATTATTGCGGTCATCACGAGGTCGCCACCAGATACTTCCGTCGAGGTTCAGGGATTCGGTTCTTGGTACGTGGAAGAATAAAAGAATCCAAGTGGAGAATACATGTTCCATCTATAAAGAAAGTGATTCTTTAGGGGAAGATGAGTCGAAGTTCAGTGGAATGGAATTTGCAAAACAGGGAGATAGGATTAATAGTAGTCTAAGAAATTCAATGTGTTGTCCATATACCGAAATGGAGAAGGAAAGAGTCCTGGGTGCCTTAGATTGGAATGATTTCGACCCCGCGGACACGGAGCATGCGAAATCCTTTAGTACTGTGAGAACAACAGTTAAAGAGGGTTGTTCATCGTTAGTTAAAGTTCAGAATTATGCGTCCGGACTTAATTCTGAAGGCACTGATCCAAAAACTAATGGGAAAGCTGAAAAGAGGACAGACATTTACAAACTAGAGGATTTTGCTTGCGGTGATATAGTTTGGGCAAAATGCGGGAAGAGGTATCCGGCCTGGCCTGCTATAGTGATTGATCCCTTCTTGCAAGCTCCCAAATCGGTCCTGAACTGTTGTGTTCCAGGTGCAATTTGCGTCATGTTTTTTGGGTACTCAAAAAATGGAAAGCAAAGGGACTATGCGTGGGTGAGAAAGGGAATGGTATTCCCCTTCATGGAATTCATGGACAGATTCCAGGGGCAGACCCGACTGTACAGGAGCAAACCAAGTGACTTTCGAATGGCACTAGAGGAGGCTTTGTTGGCAGAAGATGGTATTCTGGACTCAAATTTGGGAGCAGATATAATTACTAAATCTAATTTTGAAGCTCTTCCCAGTGTAGATTTAGAGGTTATGGGTTCATATGATGATCAGGAGGACAACTGCCAGGACCAGGATGCTAGACTTTGTGCTGGCTGTGGTTTGATGTTAACATGCAAAGCCATGAAGAAGACTAAGGATTCTAGTGCTCAACTTTATTGTAGACATTGCCTGAAGTTGCAAAAATCCAAACAATACTGCGGCATTTGCAAAAAGATTTGGCACCACTCAGATGGTGGGAATTGGGTATGTTGCGATGGTTGCAATGTTTGGGTGCATGCAGAATGTGATAAAATCTCCAGCAAACTTTTAAGGGATCTGGAACTTACGGACTACTATTGCCCAGATTGCAAAACAAAAGTCAACTGTAAATTTGTAGAATCACGTTCATCCAATTCAAAAATCAATTCAATAGAAAATAACCAAGAACATATGATACCTGAGGAGGTAACGGTGGTGTGCAATGGCATGGAAGGAATTTACATTCCAAGTCTTCATTCGGTTATGTGCAAATGTGGTTCATGTGGGTCAAGGAAGCAGACACTGGGTGAATGGGAGCGGCATACAGGTTGCAGAGCCAAAAAATGGAAATTCAGCGTGAAAGTAAAAAGCACAATGCTACCCCTAGAAAAATGGATTACCGAGAACAATTCTCAAGCTGGGGTTTCCCTAAAGTTGGATCAGCAGAAGGTACTTGCCTTTTTGCAAGAGAAGTACGAACCAGTGTATGCAAAATGGACTACAGAAAGGTGTGCCATTTGTAGATGGGTTGAAGATTGGGATGACAACAAGATTATTATCTGTAACAGGTGCCAAATTGCTGTCCACCAAGAATGCTATGGGGTGAAGGACGTTAAGGATTTTACTTCTTGGGTTTGTAGAGTATGTGAAACTCCTGATGTTGATAGAGAATGCTGCCTCTGTCCGGTAAAAGGTGGTGCTCTGAAGCCAACTGATGTTGAAATGCTGTGGGTTCATGTAACATGCGCTTGGTTTCGGCCTGAAGTTATTTTCCAAAACCACGAGGCAATGGAACCTGCCATTGGAATCCTTAAAATTCCTCCAAATTCGTTTTCAAAGATTTGCATTATCTGTAAACAAAGCCATGGGTCATGCTTAAGTTGTTGCAAATGTGCTACTTATTTTCATGTGATGTGTGCATCAAGAGCTGGATATAGCATGGAATTGCATTCCAAGGAGAAGAATGGGAGTCAGAGAACAACAAAGTTAATATATTGTGCAGTTCATAGGGCCCCAAAACCAGATTCAGTACTGGTTGTGCACACACCCTTGGGTGTTTTCTCTCCCAGAACTGAACTTCAAGATCATAAGGGATGCTTCAGGGGATCGAGGCTAGTTTCACCAAAGGAGGTAGAACTTGAAGGGCCCTCAACCTCTGAGATTAACAAGTTTGAGCCACCTTCTGCTGCCAGATGTCGTGTTTACAGAAGGCCTCTCAATAAGAAAGTTGATAAGCCAGTAATTCACTTACTGGGCGGACCAAGGCATCATTCTTTAAGTGCAATAACTCAATTGAACAGTTATAAGGACGTTGAACATTCTGATGTATTTCTTTCGCTCAAGGAACGCCTTTATCATTTGCAGAAAACTGTAAAGCATCAAGTTTGCTTTGGAAAATCTGGTATACATGGATGGGGCCTCTTTGCTCATCGAGATATAGAAGAAGGAGAGATGGTTGCTGAGTATTGTGGTGAACAGGTAAGGCGGAGCATAGCTGATTTAAGGGAAGCAAAGTACCGGTCAGAAGGCAAAGATTGTTATCTGTTCAAGATCAGCGAGGAAGTGGTAATTGATGCAACAGATAAGGGCAACATAACACGCTTGATAAACCATTCTTGCATGCCAAACTGCTATGCGAGGATTATAAGTTTGGATGATGAGGAGAGCAGAATTGTTCTTATTGCCAAGACCAATATCTCTGCTGGTGAAGAACTAACGTATGACTACTTGTTTGATCCGGATGAGCTTGATGAACTGAAAGTTCCCTGCCATTGCAATGCCCCAAATTGTAGGAAATTTATGAATTAG 3522 0.4233 MASYIASCLNLSLVFSREIAISCLIEHPVRLRICQFQVIFLGLNRCLVVASLFNLDGFCVQFLGICAADGARILKLNWTGAEWINARLWSSVPDLLDLWLWYIDEKTSSFVVKSFIVHFLASDSPRMIIKRAVKFEIPNLKRCQLEELDPEDSTCATNPKKRMANGFLSTGMAAEDEYLGSNSGFLCSKESHCGGDLLSSSDSMKSDAKTVLKPGSKKVRPPLLRSSRGRHQILPSRFRDSVLGTWKNKRIQVENTCSIYKESDSLGEDESKFSGMEFAKQGDRINSSLRNSMCCPYTEMEKERVLGALDWNDFDPADTEHAKSFSTVRTTVKEGCSSLVKVQNYASGLNSEGTDPKTNGKAEKRTDIYKLEDFACGDIVWAKCGKRYPAWPAIVIDPFLQAPKSVLNCCVPGAICVMFFGYSKNGKQRDYAWVRKGMVFPFMEFMDRFQGQTRLYRSKPSDFRMALEEALLAEDGILDSNLGADIITKSNFEALPSVDLEVMGSYDDQEDNCQDQDARLCAGCGLMLTCKAMKKTKDSSAQLYCRHCLKLQKSKQYCGICKKIWHHSDGGNWVCCDGCNVWVHAECDKISSKLLRDLELTDYYCPDCKTKVNCKFVESRSSNSKINSIENNQEHMIPEEVTVVCNGMEGIYIPSLHSVMCKCGSCGSRKQTLGEWERHTGCRAKKWKFSVKVKSTMLPLEKWITENNSQAGVSLKLDQQKVLAFLQEKYEPVYAKWTTERCAICRWVEDWDDNKIIICNRCQIAVHQECYGVKDVKDFTSWVCRVCETPDVDRECCLCPVKGGALKPTDVEMLWVHVTCAWFRPEVIFQNHEAMEPAIGILKIPPNSFSKICIICKQSHGSCLSCCKCATYFHVMCASRAGYSMELHSKEKNGSQRTTKLIYCAVHRAPKPDSVLVVHTPLGVFSPRTELQDHKGCFRGSRLVSPKEVELEGPSTSEINKFEPPSAARCRVYRRPLNKKVDKPVIHLLGGPRHHSLSAITQLNSYKDVEHSDVFLSLKERLYHLQKTVKHQVCFGKSGIHGWGLFAHRDIEEGEMVAEYCGEQVRRSIADLREAKYRSEGKDCYLFKISEEVVIDATDKGNITRLINHSCMPNCYARIISLDDEESRIVLIAKTNISAGEELTYDYLFDPDELDELKVPCHCNAPNCRKFMN 1173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju05g2131 1173 CDD SET_SETD1-like 1020 1169 - -
Alju05g2131 1173 Pfam PHD-finger 557 610 IPR019787 -
Alju05g2131 1173 ProSitePatterns Zinc finger PHD-type signature. 742 787 IPR019786 -
Alju05g2131 1173 Pfam PHD-finger 754 788 - -
Alju05g2131 1173 Pfam PWWP domain 377 472 IPR000313 -
Alju05g2131 1173 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 550 615 IPR013083 -
Alju05g2131 1173 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 791 909 IPR013083 -
Alju05g2131 1173 Pfam SET domain 1042 1147 IPR001214 GO:0005515
Alju05g2131 1173 CDD PHD_TCF19_like 558 608 - -
Alju05g2131 1173 CDD PHD_ATX3_4_5_like 741 787 IPR042011 -
Alju05g2131 1173 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 736 790 IPR013083 -
Alju05g2131 1173 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 123 1173 IPR025780 -
Alju05g2131 1173 SUPERFAMILY SET domain 1024 1170 IPR046341 -
Alju05g2131 1173 SMART PWWP_4 374 443 IPR000313 -
Alju05g2131 1173 Pfam PHD-zinc-finger like domain 795 907 - -
Alju05g2131 1173 PANTHER PHD FINGER PROTEINS 201 589 - -
Alju05g2131 1173 Gene3D SET domain 1018 1173 IPR046341 -
Alju05g2131 1173 ProSiteProfiles Post-SET domain profile. 1157 1173 IPR003616 -
Alju05g2131 1173 ProSiteProfiles Zinc finger PHD-type profile. 739 790 IPR019787 -
Alju05g2131 1173 SUPERFAMILY FYVE/PHD zinc finger 740 803 IPR011011 -
Alju05g2131 1173 SMART PHD_3 741 788 IPR001965 -
Alju05g2131 1173 SMART PHD_3 852 908 IPR001965 -
Alju05g2131 1173 SMART PHD_3 557 609 IPR001965 -
Alju05g2131 1173 ProSiteProfiles Extended PHD (ePHD) domain profile. 793 908 IPR034732 -
Alju05g2131 1173 Gene3D - 364 478 - -
Alju05g2131 1173 SUPERFAMILY Tudor/PWWP/MBT 372 476 - -
Alju05g2131 1173 CDD PWWP_AtATX3-like 377 476 - -
Alju05g2131 1173 FunFam Histone-lysine N-methyltransferase 791 910 - -
Alju05g2131 1173 SMART set_7 1031 1154 IPR001214 GO:0005515
Alju05g2131 1173 SMART PostSET_3 1157 1173 IPR003616 -
Alju05g2131 1173 SUPERFAMILY FYVE/PHD zinc finger 555 616 IPR011011 -
Alju05g2131 1173 ProSiteProfiles SET domain profile. 1031 1148 IPR001214 GO:0005515
Alju05g2131 1173 ProSiteProfiles PWWP domain profile. 376 445 IPR000313 -
Alju05g2131 1173 FunFam Histone-lysine N-methyltransferase 1006 1173 - -
Alju05g2131 1173 ProSiteProfiles Zinc finger PHD-type profile. 555 611 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju05g2131 Alju-ChrAlju05 54627988 54637647 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju05g2131 742 895 C2H2 Transcription Factor Family AT3G14740 35.185 1.51e-20 92.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Alju05g2131 zf-HC5HC2H_2 2.4e-28 CL0390