Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju05g2108 ATGGGAAGAGCTCCATGCTGTGCAAAAGTTGGGCTTCACAGAGGTCCATGGACTCCTAAAGAAGACGCATTGCTCACCAAGTATATCCAAGCTCATGGTGAAGGCCAATGGAGATCCTTACCTAAACGAGCTGGGCTTTTGAGGTGTGGGAAAAGTTGCAGGCTGAGGTGGATGAACTATCTGAGACCAAACATAAAGAGAGGAAACATAACACCCGAAGAGGACGATCTCATAATCCGAATGCACTCTCTTCTCGGCAATCGATGGTCTCTCATTGCAGGAAGGTTACCTGGAAGAACAGATAATGAAATCAAGAACCACTGGAACACACATCTCAGCAAAAGGCTAAGGAACCAAGGAACCGACCCAATCACTCACAAGAAGCTCTCTTCTTCGTCGTCATCCCTACCAAATTCTCAGACGAAGAAGGCGAACAAGAAGAAGAAGAAAGGCAAGGCGCGTGAGAATAAAAATGGAGTAGCAGCAGAGAAAGATGAAGAGAAGAAGACAATAGTGTATCTTCCCAAGCCAATCAGAGTCACGGCCCGTATTTCTTCTCCAATCCCCAGAAGTGATAGTGACCAGAACTTGAACTCGTTCGATTCCAACTCAGCGAGTGGATCTACAAGCCAAGAGAAGGAGGAAGGGAAGGTTCCTTGGGGAGAGAATAATAATAATAATAATATTAATAACTACTATACTTATGGTGGCGAAAATGATCATGAGTTTGTGGGGTTATTTGAGGGGGACAATGACTTGGTCAACGGGTCGGACATGGAGGGGCAATCGGAGTTTCCGACCTCGGCCGAGCAACATGGGACGCTGGAGAAGCTGTACGAGGAATACTTCCAGCTCTTGAATAACCAACAAAACCAAGACGAGTTGGAGTCTTTTGCTGAATCCTTACTGGTTTGA 915 0.4601 MGRAPCCAKVGLHRGPWTPKEDALLTKYIQAHGEGQWRSLPKRAGLLRCGKSCRLRWMNYLRPNIKRGNITPEEDDLIIRMHSLLGNRWSLIAGRLPGRTDNEIKNHWNTHLSKRLRNQGTDPITHKKLSSSSSSLPNSQTKKANKKKKKGKARENKNGVAAEKDEEKKTIVYLPKPIRVTARISSPIPRSDSDQNLNSFDSNSASGSTSQEKEEGKVPWGENNNNNNINNYYTYGGENDHEFVGLFEGDNDLVNGSDMEGQSEFPTSAEQHGTLEKLYEEYFQLLNNQQNQDELESFAESLLV 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju05g2108 304 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Alju05g2108 304 CDD SANT 16 61 IPR001005 -
Alju05g2108 304 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Alju05g2108 304 Gene3D - 14 66 - -
Alju05g2108 304 MobiDBLite consensus disorder prediction 186 213 - -
Alju05g2108 304 MobiDBLite consensus disorder prediction 184 227 - -
Alju05g2108 304 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Alju05g2108 304 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Alju05g2108 304 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 227 - -
Alju05g2108 304 MobiDBLite consensus disorder prediction 115 165 - -
Alju05g2108 304 CDD SANT 71 112 IPR001005 -
Alju05g2108 304 FunFam Myb transcription factor 11 67 - -
Alju05g2108 304 SMART sant 13 63 IPR001005 -
Alju05g2108 304 SMART sant 66 114 IPR001005 -
Alju05g2108 304 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Alju05g2108 304 MobiDBLite consensus disorder prediction 115 141 - -
Alju05g2108 304 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Alju05g2108 304 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Alju05g2108 304 Gene3D - 69 156 - -
Alju05g2108 304 FunFam MYB transcription factor 68 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju05g2108 Alju-ChrAlju05 54394244 54395515 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju05g2108 4 146 MYB Transcription Factor Family AT3G13540 65.734 3.63e-69 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Alju05g2108 Myb_DNA-binding 8.8e-14 CL0123