Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju05g2102 ATGCTCTATGGGGACAAAGATAGGTCGCGTAAAGATGATGATATTATTTGGCATTTAGAAAAGTCCACGGAAAAGTCAACTCAACTATACTATGCCTTATTTGGTTTGAATCCATTATCTAAGATTTTTGTTTTTGGGTGTTGTTTCTGGTTCGTATTGACATCAGATGCCAAGTCTGTAAAATTTGAGACTGAACTGAAGCTGTGGAAAATTTTCTACAGTCCTTTTGCCATTATTGATACTATTGCTGAGTTAGTAGTTGGTGCTAGTGAAGTCCTTGTGAGGAATGATAGTTTCAAAGAACTTGTAGCCTACTTGGAAAGAATTGTACCAATCTTGAGAGAATTGAAGACAAAAAATGTCACTAATTCTGAGGCCTTTACCAATGCCATTGATGTTCTGAATCGTGAAACTAGAGATGCAAACAAACTGACTCAAGAATGCTGCAAAAAGAGCAAGGTATACCTGCTAGTGAACTCCATGTCGATCAATAGGCGTTTACAGAAGACAATAGGCGAGATCAGCCGGGCACTTGGTCTTCTTCCTTTGGCCACATCAGAAATTTCTTCTAACACAGTTGAAGCAATTGGAAAGCTATGTGATGATATGCAGAAAGCTGAGTTCAAGACAAGTGTAGCAGAAGAGAAGATTTTGGAGAAAATCGAGTCAGGCATAGTGGAAAACAGTGTTGATCGCTCCTATGCAAATAATTTGCTGATCCAAATTGCTGAGGCTGTTGGGGTTACTGCTGAGAGGTCAACATTGAAGAAGGAACTTGAAGATTTTAAGATTGAAATTGAAAATTGCCACCTTAGGAAAGACCAGGCTGAAGCCATGTATATGGATCAGATCATTGCTTTGTTGGAGAGAGGTGATGCAGCATCATCACCTAAGGAAAAGGAACTTAAGTACCTTTCAAAGAGAAACTCTTTGGGAAGTCAAACATTGGAGCCACTCCAATCATTTTATTGCCCTTTAACTCAGCAAGTTATGGAGGACCCTGTTGAAACTTCATCAGGGAAGACATTTGAGAGAAGTGCCATAGAAAAAAGGTTTGCTGAAGGAAATAGTCTATGTCCTCTCACCATGACTCCTTTAGACACATCAGTTTTAAGGTCTAACAAGGTCTTGAAGCAGTCAATAAGAGAGTGGAAGGATAGGAATACAATGAGAACAATTGTTTTGACAAAAGAAAAACTTCATTCACAAGATGATGATGATGAAATGTTACATTGTCTGGGAACTCTACAGGATTTGTGTGAACAAAGTGATCTGCACAGAGAGTGGTTGGTGCTGGAGAATTACATACCAGTTCTTATCCAGATTCTTGGTGCTAAAAACCATGTTGTAAGAAACCACGCTCTAGCCATCCTTAACATGTTGGCAAAGGATAGTGATGATGCTAAGGAAAGAATTGCCAACATTGACGATGCAGTTGCATGTATTGTTCATTCACTTGCACGCCGTGAGGGGGAAAGGAAGCTGGCAGTGGAATTACTCTTGCAATTATCCAAATATGATTCGGTTCGAGAGGAAATTGGAGAGGTTCAAAGTTGTATGCTACTACTTGTGACTATGTCTAGCAGTGACGATAATGAAGCTGCCAGAAATGCAAAGGAGCTTTTGGAGATTCTTTCATACTCTGATAACAATGTTTTAAAGATGGCAAGGGCAAATTATTTCCACCATCTTGTACATCGTCTTTCCACAGGACCTAATGATGTGAAAATGACCATGGCAACAGCTCTATCAGAAATGGAGTTAACCAACCGCAATAAAGCATCCTTATTTGAAGCTGGTGTGTTCGGTCCTCTTCTTCATTTGTTTTCACATTCTGATATTCAAGTGAAAACAGTGGCCATTAGGGCTTTAAGGAACCTATCCACTTTAAAGAAAAATGGACTGAAGATGATTCGACAAGGTGTAGTACGCCCCATACTTGACCTTCTATTCCAGCCTGGCTTGATATCTGTAAGTTTAAAGGAGCACATATCATCCCTAATCATGCAACTTGCAGCTTCAACTATCTCTGAAGATGACAAAGCACCAACTTTACTGTTAGAATCTGATGAAGATGCTTTAAAACTCTTCTCTTTAATTAGTTTCGCGAGGCCGGATGTGCAGCAAAACATTTTACAGACCTTCTATGCGTTGTGTCAGTCCCCATCAGCCTCATTTATCAGAAGCAAGCTAAGAGAGTGCTCAGTTTTTGAAGTTTTGGTCCAGCTCTGTGAGCAGGAAAATCTAAACCTAAGAGCAAGTTCTGTAAAGCTGTTTGCTTGCTTGGTATGCGAAGAAGCTAGCATCCTGGAAAACATAAATCAGAAATGTGCTGAAGCTATGCTCAAGATCCTGAGATCTTCTTCAGATGAAGAGGAAATTTCATCTGCTCTGGGCATAGTACATTATCTTCCAAAAAATCGCCAAATCACACAGTGGCTTCTAGATGCTGGTGCACTTCCTATCATATATAATCACCTCCAAAATTTGAAGGACTTAGATTACCAAGAGAGCAAGTTAATAGAAAATGCCATTGGGGCCTTGAGTCATTTCACTGCTTCAACAAACCCAGAATGGCAAAAGTTTGCTGCTGAAACTGGTGTTATATCAGTTCTAGTGAAGTTACTTGAATGTGGAACTGCATCAACAAAACGGCAAGCAGCATTATCTCTTGCTCAATTTTCAAAGAGTTCACTTGGGCTGAGCAGGCCAGTGTCCAAGCCCAAGGGCTTTTGGTGCTTCTCAGTTCCAACACAAATTAGCTGCTTGGTTCATGGAGGAATATGTACTGTGAAGTCATCATTTTGCCTTGTTGAGGCTGATGCAGTGAGGCCATTAGTGAGGACACTTGGGGAATCTGATCCAGAAGCTTCTGAGGCTTCTTTAGATGCACTATTGACATTAGTTGAAGGAGAAAGACTACAAGGTGGTAGTAAAGTGCTTGAAGAAGCAAATGCCATACCACTAATAATAAAATGTCTTAATTCCCCATCCCATGGATTACAGGAGAAGTCTCTGCATGCTTTGGAAAGGTTTTTTCGGCTATCGGAGTTCAAACAGTTGTATGGAGCCTCAGCTCATATGCCTCTTGTTGATTTAACTCAAAGAGGTACCAATCGTGTGAGATCTCTGGCAGCTAAAGTTTTGGCACATTTAAACGTGCTTCAGTATCAATCTTCTTATTTCTAA 3189 0.4023 MLYGDKDRSRKDDDIIWHLEKSTEKSTQLYYALFGLNPLSKIFVFGCCFWFVLTSDAKSVKFETELKLWKIFYSPFAIIDTIAELVVGASEVLVRNDSFKELVAYLERIVPILRELKTKNVTNSEAFTNAIDVLNRETRDANKLTQECCKKSKVYLLVNSMSINRRLQKTIGEISRALGLLPLATSEISSNTVEAIGKLCDDMQKAEFKTSVAEEKILEKIESGIVENSVDRSYANNLLIQIAEAVGVTAERSTLKKELEDFKIEIENCHLRKDQAEAMYMDQIIALLERGDAASSPKEKELKYLSKRNSLGSQTLEPLQSFYCPLTQQVMEDPVETSSGKTFERSAIEKRFAEGNSLCPLTMTPLDTSVLRSNKVLKQSIREWKDRNTMRTIVLTKEKLHSQDDDDEMLHCLGTLQDLCEQSDLHREWLVLENYIPVLIQILGAKNHVVRNHALAILNMLAKDSDDAKERIANIDDAVACIVHSLARREGERKLAVELLLQLSKYDSVREEIGEVQSCMLLLVTMSSSDDNEAARNAKELLEILSYSDNNVLKMARANYFHHLVHRLSTGPNDVKMTMATALSEMELTNRNKASLFEAGVFGPLLHLFSHSDIQVKTVAIRALRNLSTLKKNGLKMIRQGVVRPILDLLFQPGLISVSLKEHISSLIMQLAASTISEDDKAPTLLLESDEDALKLFSLISFARPDVQQNILQTFYALCQSPSASFIRSKLRECSVFEVLVQLCEQENLNLRASSVKLFACLVCEEASILENINQKCAEAMLKILRSSSDEEEISSALGIVHYLPKNRQITQWLLDAGALPIIYNHLQNLKDLDYQESKLIENAIGALSHFTASTNPEWQKFAAETGVISVLVKLLECGTASTKRQAALSLAQFSKSSLGLSRPVSKPKGFWCFSVPTQISCLVHGGICTVKSSFCLVEADAVRPLVRTLGESDPEASEASLDALLTLVEGERLQGGSKVLEEANAIPLIIKCLNSPSHGLQEKSLHALERFFRLSEFKQLYGASAHMPLVDLTQRGTNRVRSLAAKVLAHLNVLQYQSSYF 1062
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju05g2102 1062 SUPERFAMILY RING/U-box 308 389 - -
Alju05g2102 1062 Gene3D - 921 1058 IPR011989 -
Alju05g2102 1062 ProSiteProfiles U-box domain profile. 317 391 IPR003613 GO:0004842|GO:0016567
Alju05g2102 1062 Coils Coil 259 279 - -
Alju05g2102 1062 Pfam U-box domain 322 388 IPR003613 GO:0004842|GO:0016567
Alju05g2102 1062 CDD RING-Ubox_PUB 322 371 IPR045210 -
Alju05g2102 1062 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 298 398 IPR013083 -
Alju05g2102 1062 Gene3D - 525 903 IPR011989 -
Alju05g2102 1062 Pfam Armadillo/beta-catenin-like repeat 590 628 IPR000225 GO:0005515
Alju05g2102 1062 Gene3D - 76 186 IPR036537 GO:0007166
Alju05g2102 1062 Gene3D - 399 524 IPR011989 -
Alju05g2102 1062 SUPERFAMILY ARM repeat 399 1052 IPR016024 -
Alju05g2102 1062 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 78 1062 - -
Alju05g2102 1062 SMART arm_5 974 1014 IPR000225 GO:0005515
Alju05g2102 1062 SMART arm_5 589 629 IPR000225 GO:0005515
Alju05g2102 1062 SMART arm_5 807 853 IPR000225 GO:0005515
Alju05g2102 1062 SMART arm_5 423 462 IPR000225 GO:0005515
Alju05g2102 1062 SMART arm_5 630 673 IPR000225 GO:0005515
Alju05g2102 1062 SMART arm_5 930 970 IPR000225 GO:0005515
Alju05g2102 1062 SMART arm_5 856 896 IPR000225 GO:0005515
Alju05g2102 1062 SMART Ubox_2 321 384 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju05g2102 Alju-ChrAlju05 54311541 54317063 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju05g2102 320 1062 U-box Gene Family AT1G76390 27.421 1.69e-65 235