Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju05g2084 ATGTCAGAAGGTGCGGAAGTTGATGAGCGGGTGGACTTTGATGAGGAAAACTACATGGAGGAGATAGAAGATGATGTGGAAGAACAAATATATGATGAAGGAGTGGATGGAGGTGGTGATGAAAATGAGGAGAATGTTGAGGAACATGAATATGAAGATTCAGTAGCAGAACCTTGTGGGAAAGACCAATATCCCGAGGCAGATGGAAGTGACTTTGGTACTGACTCTGTAGAAAATGAGCAAAAGCCATTTTACATTGATGAAAATGAGAAGGAGATACATGAGGAACTTCTTGCACTTCCTCCTCATGGTTCTGAAGTATTTATTGGTGGACTTCCTCGGGATACATGCGAAGATGACTTAAGAGAAATGTGTGAGCCAATTGGTGATATTCTTGAGGTGAGACTTATGAAAGATAGGGATACAGGAGATGTTAAGGGCTATGCTTTTGTGGCATTTAAAACGAAAGAGATCGCACAGAAGGCTATTGAAGAGTTACATAGCAAGGAATTTAAGGGTAAAACTTTAAGGTGTTCTGTGTCTGAAACAAAGCACAGATTGTTTATTGGTAATGTTCCAAAAGCCTGGACGGAGGATGAGTTTAGGAAAGTCATCATGGGTGTTGGTCCTGGAGTTGAAAATATTGAGCTGATAAAGGACCCCCAAATTGCAAGCAGGAATCGTGGGTTTGCTTTTGTATTGTATTATAATAATGCCTGTGCTGATTATTCTCGGAAAAAGATGTCGAATGCAAACTTTAAGCTGGATGGTAATACCCCCACTGTCACTTGGGCAGATCCAAAGAACTCACCTGATCATTCGGCCTCATCACAAGTTAAAGCTCTTTATGTGAAAAACATACCTGAGAATACTACTACTGAACAACTGAAGGAACTGTTCTGCCGACACGGAGAAGTAACCAAAGTGGTCATGCCTCCTGGGAAAGCTGGTGGCAAACGTGACTTTGGTTTCATTCATTATGCAGAGAGGTCAAGTGCATTGAAGGCAGTGAAAGATACAGAAAAATATGAAATAGATGGCCAAGCGTTGGAAGTTGTTCTAGCAAAGCCTCAAGCTGATAAAAAAACTGATGGAGGTTATGCCTACAATCCTGGGCTTCAACCACATCCTGGGTATGGTGGTTTCTCTGGAAATCTATACGGTTCTATGCGGCCTGCATATGGCGCTACTGGTGGTTATCAACAACCAGTGATATATGGTAGGGGTCCAATGCCAGCAGGAATGCAGATGGTTCCAATGGTATTACCTGACGGTCGTATCGGCTATGTCCTTCAACAGCCAGGCGCGCAGATGTCAGCTCCTCCCCGACCCCACAGGAACAATGGCCGAAGCAGTCAGCCGGGGCGAGGGGGAGGCAGCGGCAATGATGAGGGCAATCGCAGTAGAAGGTATCGACCTTATTAA 1425 0.4407 MSEGAEVDERVDFDEENYMEEIEDDVEEQIYDEGVDGGGDENEENVEEHEYEDSVAEPCGKDQYPEADGSDFGTDSVENEQKPFYIDENEKEIHEELLALPPHGSEVFIGGLPRDTCEDDLREMCEPIGDILEVRLMKDRDTGDVKGYAFVAFKTKEIAQKAIEELHSKEFKGKTLRCSVSETKHRLFIGNVPKAWTEDEFRKVIMGVGPGVENIELIKDPQIASRNRGFAFVLYYNNACADYSRKKMSNANFKLDGNTPTVTWADPKNSPDHSASSQVKALYVKNIPENTTTEQLKELFCRHGEVTKVVMPPGKAGGKRDFGFIHYAERSSALKAVKDTEKYEIDGQALEVVLAKPQADKKTDGGYAYNPGLQPHPGYGGFSGNLYGSMRPAYGATGGYQQPVIYGRGPMPAGMQMVPMVLPDGRIGYVLQQPGAQMSAPPRPHRNNGRSSQPGRGGGSGNDEGNRSRRYRPY 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju05g2084 474 CDD RRM_SF 107 179 - -
Alju05g2084 474 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 105 183 IPR000504 GO:0003723
Alju05g2084 474 MobiDBLite consensus disorder prediction 8 51 - -
Alju05g2084 474 SUPERFAMILY RNA-binding domain, RBD 101 184 IPR035979 GO:0003676
Alju05g2084 474 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 186 266 - -
Alju05g2084 474 Gene3D - 268 401 IPR012677 -
Alju05g2084 474 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 280 357 IPR000504 GO:0003723
Alju05g2084 474 FunFam Heterogeneous nuclear ribonucleoprotein Q 270 361 - -
Alju05g2084 474 Gene3D - 11 185 IPR012677 -
Alju05g2084 474 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 12 456 - -
Alju05g2084 474 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 185 267 IPR000504 GO:0003723
Alju05g2084 474 MobiDBLite consensus disorder prediction 1 77 - -
Alju05g2084 474 SUPERFAMILY RNA-binding domain, RBD 272 381 IPR035979 GO:0003676
Alju05g2084 474 Gene3D - 186 266 IPR012677 -
Alju05g2084 474 MobiDBLite consensus disorder prediction 444 459 - -
Alju05g2084 474 MobiDBLite consensus disorder prediction 435 474 - -
Alju05g2084 474 SMART rrm1_1 186 263 IPR000504 GO:0003723
Alju05g2084 474 SMART rrm1_1 281 353 IPR000504 GO:0003723
Alju05g2084 474 SMART rrm1_1 106 179 IPR000504 GO:0003723
Alju05g2084 474 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 107 177 IPR000504 GO:0003723
Alju05g2084 474 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 187 253 IPR000504 GO:0003723
Alju05g2084 474 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 282 350 IPR000504 GO:0003723
Alju05g2084 474 SUPERFAMILY RNA-binding domain, RBD 186 273 IPR035979 GO:0003676
Alju05g2084 474 FunFam Heterogeneous nuclear ribonucleoprotein Q isoform A 8 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju05g2084 Alju-ChrAlju05 54005431 54015724 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju05g2084 107 444 Eukaryotic Initiation Factors Gene Family AT2G23350 24.282 4.10e-17 82.4