Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju05g2079 ATGAGTATCTCTGTGAATGGACAATCTCAGGTCCCTCCTGGCTTCAGATTCCACCCCACCGAAGAAGAGCTTTTGCAATACTACTTGAGGAAGAAGGTCTCCTACGAGAAGATTGACCTCGACGTCATTCGTGACGTCGATCTCAACAAGCTCGAGCCTTGGGATATTCAAGAGAAGTGTAAGATAGGAACCACACCGCAAAACGACTGGTACTTCTTCAGCCACAAAGACAAGAAGTACCCCACCGGCACGCGAACCAACCGAGCCACGGCGGCCGGATTCTGGAAAGCCACCGGGCGGGATAAGGTGATATACAGCAACGGCAAGAGGATCGGAATGAGGAAGACTCTTGTCTTCTACAAAGGCCGCGCCCCTCATGGCCAGAAATCAGATTGGATCATGCACGAATATCGCCTAGACGATAACACCAGCGACACCAACATCGTGTCGAATGTAATGGGAGATGGAGCCCAGGAAGAAGGATGGGTGGTGTGCAGAATATTCAAGAAGAAGAATCATCTGAAAACCCTAGATTGCCCCTTAGCTTCGTCCATTATTACCGGAGAAAGCACCAGAAGAAGCCATGGCCACAACATGTTCGACGACGACGAAGGAGCTTTAGAGCAGATACTTCAACAAATGGGAAGAAGCTGCAAGGAAGAGAACGAAGTGAATTACGGCAACAACAATAACGGAAGATTCTCTCTATCACCAAGCTTCAACAATAATAATGGTGGTGATCATTATAGTTCCAACAACTACAATGACAAGTTCTTGAAGCTCCCAAGCTTAGAAAGTCCAAAATCCACAAGCTTAGAGAATAATCATAGTAACATTGACACCAACAATAATGTGTACCACCCTATGATCCCTGAGATGGAAGGATCCTTCACCACCGTTCATCACGTGGATGGATCTAACGGTGGAAGGCTCGCCAACTGGGCGGCTCTGGATCGTCTTGTTGCTTCGCAGCTCAATGGCCAGACTGAGTCTTCAAGGCAGCTAGCTTGCTTCAGTACTGACCCCACGAGCAGCGCCATGATGGCGTACTGTACTAACGACGTCGTTCAGGATCTGCAAATGCCCACCCTACGATCCTCCTCATCGTCCACGTCAACGTCCATGCACAGAGCTGCGTACGTGAGCCCTCACGCACAAGATTATAACAGCAGCGAGATTGACCTATGGACCTTTGCCAGATCAGCATCGTCGTTGTTGTCGTCATCCTCAGAGCCACTGTGCCATGTGTCGAACACGTCAGTGTAA 1266 0.4913 MSISVNGQSQVPPGFRFHPTEEELLQYYLRKKVSYEKIDLDVIRDVDLNKLEPWDIQEKCKIGTTPQNDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKVIYSNGKRIGMRKTLVFYKGRAPHGQKSDWIMHEYRLDDNTSDTNIVSNVMGDGAQEEGWVVCRIFKKKNHLKTLDCPLASSIITGESTRRSHGHNMFDDDEGALEQILQQMGRSCKEENEVNYGNNNNGRFSLSPSFNNNNGGDHYSSNNYNDKFLKLPSLESPKSTSLENNHSNIDTNNNVYHPMIPEMEGSFTTVHHVDGSNGGRLANWAALDRLVASQLNGQTESSRQLACFSTDPTSSAMMAYCTNDVVQDLQMPTLRSSSSSTSTSMHRAAYVSPHAQDYNSSEIDLWTFARSASSLLSSSSEPLCHVSNTSV 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju05g2079 421 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 9 268 - -
Alju05g2079 421 FunFam NAC domain-containing protein 20 174 - -
Alju05g2079 421 ProSiteProfiles NAC domain profile. 11 170 IPR003441 GO:0003677|GO:0006355
Alju05g2079 421 Gene3D NAC domain 20 175 IPR036093 GO:0003677|GO:0006355
Alju05g2079 421 Pfam No apical meristem (NAM) protein 12 139 IPR003441 GO:0003677|GO:0006355
Alju05g2079 421 SUPERFAMILY NAC domain 7 170 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju05g2079 Alju-ChrAlju05 53943314 53944987 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju05g2079 1 420 NAC Transcription Factor Family AT2G46770 54.673 4.21e-143 410
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Alju05g2079 NAM 3.9e-36 No_clan