Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju05g2078 ATGTTGATAATGTCGCAACAAAGGCAATTCCAAATGGTGGGAGGGCAATACAACATCGACACAACATTGACAAAAATCTTCGTGGGAGGGCTTGCTTGGGAGACTCAAAGGGACACAATGAGGAGGTACTTTGAGCAGTTCGGAGAGATTCTTGAAGCTGTTGTTATCACAGAAAAGAACACAGGGAGATCCAAGGGTTATGGCTTTGTCACATTTAAGGATCCAGAAGCAGCCATGCGAGCATGTCAGAACCCTAATCCTGTTATTGATGGAAGAAGAACAAACTGCAATCTTGCTTCTCTTGGTGCAAACAAGAATCGGCCTTCTCCAACTCCTCAACTTGGTACAAGAAGGTTCAGAGCAGCACCTGGATTGGTGGGCTTGCAGCCAGCATTTCATGGCTCTTCCTCCACAATTTTCCGTCAACCCACTGGGCAATACACATTTCCATATTCACCTTACAGTTACAGATACTCTGGATATTCACAAGACTCCATCTATCCCTTGAACTATTACAGTGTGTATGGAGGTCAACAATTTTCACCATACTATTCGTCATCCAGTGGGCCATCTGGGTTAGCAGGGTTAATGAACAGTAACATTTACCCATTCTATACTCAATTTGCAGAGAGTGGCCAGGCTCATCATGGTTTTGGAGTTCATCACTATCCTCAAATGGTACACTTGCCAGTTCTTCATCCAGTCCCCTCATTTCCTTCTTCAATGCCAATGCCAACTACTCCTTGCGAAGTGGCATCAGCATCAATAGCAGCAGGGGAACAGACAGAATCAGTAGGAGCAGGTGCTTCACAAGTCTCAGCAGTAAAAGCTTCAGAACAAAACTCTTCATCAACTTAA 858 0.4452 MLIMSQQRQFQMVGGQYNIDTTLTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITEKNTGRSKGYGFVTFKDPEAAMRACQNPNPVIDGRRTNCNLASLGANKNRPSPTPQLGTRRFRAAPGLVGLQPAFHGSSSTIFRQPTGQYTFPYSPYSYRYSGYSQDSIYPLNYYSVYGGQQFSPYYSSSSGPSGLAGLMNSNIYPFYTQFAESGQAHHGFGVHHYPQMVHLPVLHPVPSFPSSMPMPTTPCEVASASIAAGEQTESVGAGASQVSAVKASEQNSSST 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju05g2078 285 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 24 101 IPR000504 GO:0003723
Alju05g2078 285 SUPERFAMILY RNA-binding domain, RBD 24 111 IPR035979 GO:0003676
Alju05g2078 285 MobiDBLite consensus disorder prediction 260 285 - -
Alju05g2078 285 Gene3D - 17 106 IPR012677 -
Alju05g2078 285 SMART rrm1_1 25 97 IPR000504 GO:0003723
Alju05g2078 285 PANTHER BOULE-RELATED 18 253 - -
Alju05g2078 285 CDD RRM_RBM24_RBM38_like 24 99 - -
Alju05g2078 285 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 26 84 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju05g2078 Alju-ChrAlju05 53914953 53916595 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju05g2078 20 202 C2H2 Transcription Factor Family AT2G19380 29.949 9.84e-17 78.2