Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju05g2072 ATGGAAGCTATTCTCTGCCTCAGTCCACCTTCCTTCTCAGCATCAAGAAACAAGCCTCAAATCGCAGCTTCAGCGAAACGGTTAGCTTCATGCTCATCGTTTCTTCCTTCTTCGGTTCATTCATTATCTCTCGGTGCTATCTGCTCTCCGCAGCCTTTCACTTCGGACCCTTCGTCTTACTCTTTATGGAGGGGGCGAAGCAGGAAAGCTAGGGTTCTAGCGGTGGTGGATGAAGAAACGGTGCTTGCAGAAGAAATTACCCGAGAAAAATATGTGGACGCAGAAAACGATGACGTTTCCCATGAGAGAGAACCAAGTAAAGTGGGAAGACCGTGTGAATTGTATGTTTGTAATCTTCCAAGGAGCTGTGATTCAACTCAGCTTCACGATATGCTCAAGCCTTATGGAACTGTCCTATCTGCTGAGGTTGATCGTAATGATGAGAGCGGTGAAAGTAGAGGATGTGGTTATGTCACAATGGGATCAATAAACTCAGCGAAAAAAGCAGTTACTGCATTGGATAGATCAGATATTGGTGGGCGAGAAATGCGGGTTAGATTTTCAGCTGAGATGAATCCTGGAAGGAGCAATGTTGAGGCGATGAACTTGTCACCCCAGAAAGTTTTATACTATGAAACTCCTCACAAGTTATATATTGGCAATCTTGCTAGGGCTGTTAAACCTGGAGACTTATGGAATCATTTTCGAAGATTTGGGACTGTGGTTAGTGTAAGAATACTGCATGATCATAAAGTAGGAAGTAGCCGTGTTTATGCATTTCTCTCCTTTCTTTCTCAGTCAGAACGTGATTCAGCATTGTCTCTTAATGGAACCGAACTTCGTGGCCGTATACTAGTAGTGAGAAAAGGCATAGAGAGGACTGTGCCATAG 891 0.4411 MEAILCLSPPSFSASRNKPQIAASAKRLASCSSFLPSSVHSLSLGAICSPQPFTSDPSSYSLWRGRSRKARVLAVVDEETVLAEEITREKYVDAENDDVSHEREPSKVGRPCELYVCNLPRSCDSTQLHDMLKPYGTVLSAEVDRNDESGESRGCGYVTMGSINSAKKAVTALDRSDIGGREMRVRFSAEMNPGRSNVEAMNLSPQKVLYYETPHKLYIGNLARAVKPGDLWNHFRRFGTVVSVRILHDHKVGSSRVYAFLSFLSQSERDSALSLNGTELRGRILVVRKGIERTVP 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju05g2072 296 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 215 292 IPR000504 GO:0003723
Alju05g2072 296 SUPERFAMILY RNA-binding domain, RBD 212 292 IPR035979 GO:0003676
Alju05g2072 296 SMART rrm1_1 216 288 IPR000504 GO:0003723
Alju05g2072 296 SMART rrm1_1 113 186 IPR000504 GO:0003723
Alju05g2072 296 SUPERFAMILY RNA-binding domain, RBD 109 195 IPR035979 GO:0003676
Alju05g2072 296 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 190 IPR000504 GO:0003723
Alju05g2072 296 Gene3D - 64 196 IPR012677 -
Alju05g2072 296 Gene3D - 197 288 IPR012677 -
Alju05g2072 296 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 184 IPR000504 GO:0003723
Alju05g2072 296 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 217 284 IPR000504 GO:0003723
Alju05g2072 296 PANTHER OS02G0815200 PROTEIN 51 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju05g2072 Alju-ChrAlju05 53883910 53885372 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju05g2072 112 287 Eukaryotic Initiation Factors Gene Family AT2G23350 27.684 1.55e-12 65.9