Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju05g2066 ATGATGGAGAGGATGCAAGGACCCATCAATTCCTGTTTCTTTGGTGAGCATTTGGAAGCAAGTTGTTTCGAGCAAGACTTCAACAAAGAGGATGAGGAACAACTTTATATATCAAGCTTAGAGGATGAAAAGATGCCTTTTCTGCAGATGTTGCAGAGTGTGGAATCTCCACAACAGTTTTTCCCATTCTCAGAGGCAAATTTTCAAACACTTTTAAGGCTACAGAACCTGAAGAAGCAACAAACATGGGAAGAAAAAGCTTACACACCCAGATTGGAGACCCAAATCCAAGCTCAAGAACTTGAAAGCTGTGTCACACACGACGTCTTCGAGATCCACTCCCCAGTGAAATCCGAAACCAACGAAGAATCTCATCTTCTCCCTCGCTCAGCCACAATGGTTCAGAAGGAACCCACCAATAATCAAGCTGAAAATTCTAGCAGGGACCCCAAACGGAGAAAGCGAAAGAGAACGAGACCAGTCAAGAACAAGGAAGAAGTAGAGAACCAGAGAATGACCCACATTGCCGTCGAACGGAACCGGCGACGCCAGATGAACGACCATCTCAGTGTTTTGAGAACACTCATGCCTCCTTCCTATATCCAAAGGGGTGACCAAGCGTCTATCATCGGAGGTGCAATTGATTTCGTGAAGGAATTGGAACAACTACTTCAAACCCTCGAGGCACAGAAGAGGATTAGAAAGAACGAAGATGTTGGATGTTCTTACAGAGGAGAGACTGTGAAACCATCGTCACTGAGCTGCGAAGGAGACGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGGTGAAGGAAGCAGAGATTATGGAGGTGATGGTGATTCAGACGCATGTGAACTTGAAGATTCGATGCAGAAAAAAGCAGGGGCAATTGGTGAGAGCCATTGTTGGGTTGGAAGAGCTTAGGCTTAGCGTTCTGCATCTGAACATTACCTCCTCGCTGGGATCGGGATCGGCACTATACTGTTTCAATCTCAAGATAGAAGAAGAGTGTAAGCTAGGGTCGGCGAATGAGATAGCAGAAGCGGTGGCTCATATATTCAGAACCATTGATAATTAA 1077 0.4522 MMERMQGPINSCFFGEHLEASCFEQDFNKEDEEQLYISSLEDEKMPFLQMLQSVESPQQFFPFSEANFQTLLRLQNLKKQQTWEEKAYTPRLETQIQAQELESCVTHDVFEIHSPVKSETNEESHLLPRSATMVQKEPTNNQAENSSRDPKRRKRKRTRPVKNKEEVENQRMTHIAVERNRRRQMNDHLSVLRTLMPPSYIQRGDQASIIGGAIDFVKELEQLLQTLEAQKRIRKNEDVGCSYRGETVKPSSLSCEGDEEEEEEEEEEVKEAEIMEVMVIQTHVNLKIRCRKKQGQLVRAIVGLEELRLSVLHLNITSSLGSGSALYCFNLKIEEECKLGSANEIAEAVAHIFRTIDN 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju05g2066 358 Gene3D - 160 243 IPR036638 GO:0046983
Alju05g2066 358 SMART finulus 175 226 IPR011598 GO:0046983
Alju05g2066 358 CDD bHLH_AtFAMA_like 172 243 - -
Alju05g2066 358 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 169 220 IPR011598 GO:0046983
Alju05g2066 358 MobiDBLite consensus disorder prediction 248 267 - -
Alju05g2066 358 Coils Coil 255 275 - -
Alju05g2066 358 MobiDBLite consensus disorder prediction 115 167 - -
Alju05g2066 358 MobiDBLite consensus disorder prediction 125 145 - -
Alju05g2066 358 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 169 237 IPR036638 GO:0046983
Alju05g2066 358 Coils Coil 217 237 - -
Alju05g2066 358 PANTHER MAX DIMERIZATION, MAD 104 356 - -
Alju05g2066 358 Pfam Helix-loop-helix DNA-binding domain 170 221 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju05g2066 Alju-ChrAlju05 53846625 53848965 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju05g2066 50 353 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G46810 41.880 1.52e-70 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Alju05g2066 HLH 2.6e-10 No_clan