Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju05g2056 ATGGAATTGACACAAGAAGCTGCAAAAGCGCCTTCAGATTATAGCAGAGAAGAAGAATCACGGGAGGAAGAAGAAGATTTATTAGTTGAAACCAGTAAGCAATACTATCCCTTTTCTTCTTCTGCTAATTCTTCACATCCAAATCTATGGTTGGGGATGATTCATCATCATCATCAACAACAATCTCCGGAGGCCACAACCCCATGTGAGTCTCACAATTCATCGTCTGGGTTAGGGTTATTACACCATCATGATACACCATCTAATTCCAATTCCACCATTGTTAACAACAACAATCCCAAGAAGCTGGACTTCATGGACTTGTCACTTGGGAACAACAAGGAAGAAGATGAAGCTAACAACAACAAACCTATAGAGAAAGAGCACATGTTTGATAAGGTTGTGACGCCCAGCGATGTGGGCAAACTGAACCGCCTAGTGATCCCGAAACAGCACGCCGAGAGGTACTTCCCCCTCGATTCTTCCTCCAACGAGAAGGGCCTTCTCTTGAATTTCGAGGACCGGAACGGCAAGCTGTGGCGGTTCCGGTACTCTTACTGGAATAGCAGCCAGAGCTATGTGATGACAAAAGGTTGGAGCCGTTTTGTTAAAGAGAAGAAGCTCGACGCCGGCGACATTGTTTCCTTCCAACGCGGCCTCGGTGAATTGTATAGACATAGGTTGTACATAGACTGGAGGCGCCGACCCGATTACGCCGCTGCCACCGATCATCTCCACCACCACCATCGCCATGCCGCCGCGGCCGCAATTACACCGTTACTCCTCCCAAATCAGTATTCAATCAGATGGGATGGTAGATTATACTCGGTCCCCACGGTGGCGGCGCCGGTGATTCCTCCTCCTCCACCACCACCGCGACACCACGAACAATTCCAGCAAGTCAACTACAACAATTACCCCTTTCGGCAGCAGCAACAACAACAACAACAATTACTTCAGTACCAGCGACAAGCACATCACCACCAGCAGCTCTATAGTGGAAGTCAAGGAAGCTATAATGAGCTGAATTTGGGATCTGGGTCATCGCTTTATTACCTGAGGACACCATCAGCGTTGGCGGCTCCGGGAGATCGGAATTTAATGGAGCAGCGAGAGGGAGGAGGCGGCATTGTGAGTCCGATGATAATTGATTCGGTTCCAGTAGTTCATGGTAAGAGCAGTTGTTCTACTAGTAGTGGTAGAATAATTGCTGATACTACAACAAAGAAGCTTAGGCTATTTGGTGTGAACATGGAATGTTCTTCTTCTTCATCCAACACAATAGGACATCATGTCCCAATGGCTGATTCATCACTTTCCTCGCCAAATCTTCAGTATTTGAGAGAATCGCATCATCATCATCATCATCATGAAGAAGAACAAGAAGAAGACCCATCACTTTCTTCATCATCATCAAGGTTTGCAGATCAAAAGGGGAAAACTTCTGTGCTTTTTGATTTGAGCCCCTCCTTCCAATACCGACACTAG 1488 0.4677 MELTQEAAKAPSDYSREEESREEEEDLLVETSKQYYPFSSSANSSHPNLWLGMIHHHHQQQSPEATTPCESHNSSSGLGLLHHHDTPSNSNSTIVNNNNPKKLDFMDLSLGNNKEEDEANNNKPIEKEHMFDKVVTPSDVGKLNRLVIPKQHAERYFPLDSSSNEKGLLLNFEDRNGKLWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGLGELYRHRLYIDWRRRPDYAAATDHLHHHHRHAAAAAITPLLLPNQYSIRWDGRLYSVPTVAAPVIPPPPPPPRHHEQFQQVNYNNYPFRQQQQQQQQLLQYQRQAHHHQQLYSGSQGSYNELNLGSGSSLYYLRTPSALAAPGDRNLMEQREGGGGIVSPMIIDSVPVVHGKSSCSTSSGRIIADTTTKKLRLFGVNMECSSSSSNTIGHHVPMADSSLSSPNLQYLRESHHHHHHHEEEQEEDPSLSSSSSRFADQKGKTSVLFDLSPSFQYRH 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju05g2056 495 ProSiteProfiles B3 DNA-binding domain profile. 131 236 IPR003340 GO:0003677
Alju05g2056 495 MobiDBLite consensus disorder prediction 56 106 - -
Alju05g2056 495 FunFam B3 domain-containing protein 124 245 - -
Alju05g2056 495 MobiDBLite consensus disorder prediction 449 479 - -
Alju05g2056 495 Gene3D - 125 251 IPR015300 -
Alju05g2056 495 CDD B3_DNA 129 218 IPR003340 GO:0003677
Alju05g2056 495 SUPERFAMILY DNA-binding pseudobarrel domain 128 221 IPR015300 -
Alju05g2056 495 MobiDBLite consensus disorder prediction 59 103 - -
Alju05g2056 495 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 24 439 IPR044800 GO:0003700
Alju05g2056 495 SMART B3_2 131 236 IPR003340 GO:0003677
Alju05g2056 495 MobiDBLite consensus disorder prediction 452 466 - -
Alju05g2056 495 MobiDBLite consensus disorder prediction 1 33 - -
Alju05g2056 495 Pfam B3 DNA binding domain 131 235 IPR003340 GO:0003677
Alju05g2056 495 Coils Coil 14 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju05g2056 Alju-ChrAlju05 53559471 53560958 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju05g2056 107 424 RAV Transcription Factor Family AT2G46870 45.946 4.50e-77 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Alju05g2056 B3 3.1e-28 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju05g2056 05 53559471 53560958 Alju05g2056 05 53559471 53560958 ECH