Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju05g2017 ATGATGTTTCATCCTGGAGGAATTCCCAAACAAACTTGTAGTCTACTTGCTGTCACATGTGGCAAAAACGTTGAGCTTGAGTTCGACGAGAAACTCACTCAGAATCAGCTCAAATATCCTTTTCCCGAGTTAACTTCTTCAGGGCGTTTGGAGGTCCAAACTCTAAACAATCCAGAAAAAGAACAGTTTCGGAAAGTTCTTGAGTCTTATCAACCAAATTTTGTATATTTACAAGGAGAACAGCTTGCAAATGGCGAAGTTGGTTCTTTGATCTGGCAAGGCGAAGAATTGTCCACCTCTGAAGCTATATCAGAGCTCCTTGGTCCCACATTGCCAACAGCTGTATACTTGGAAATCCCAAATGGGGAAAATTTGGCAGAAACTCTTCATCTTAAGGGAGTTTCATATGTGATTTATTGGAAAAATACTTTTTCTTGTTATGCTGCTTGCCATTTTCGTCAAGCATTTCTTTCAGCGGTGCAGAGCTCTTCTACACATACATGGGACGCCTTTCACCTTGCCCGTGCTTCTTTTGAGTTTTATTGTGTTCAAAACAATCAAGTCTTTCCTGGTGAGAAACATGATTCTAATGACAATATAGGGCCACACCTTCTTGGAGACTGTCTGCAAATCAATATTGACCCTCCTGAGGTCTGTGAAGATGATGAGGAAAGTTCCTCAGGCAGTCTTCCTGCTATAAAGATACATGATGATGAAGTGAACTTGAGATTTCTTATCTGTGGTTCGCCTTCCATTGTGGATGAGTCACTATTGAGATCATTGGAGGATGGACTCAAAGCACTCTTAACCATTGAAATACGGGGGAGCAAACTCCATGGCAAGTTTAGTGCTCCCCCACCGCCTCTTCAAGCAGCCACTTTTTCTCGAGGAGTCGTGACCATGCGATGTGATATGTCAACCTGTAGCTCAGCCCATATCTCTCTTCTGGTGTCTGGTAGTGCTCAAACTTGCTTCATTGATCAGTTATTGGAGAATCATATAAAAAATGAGATAATTGAGAAGAGTCAACTAGTTCGTGCCCAAATTGATGAGGGAAACAAACAGCAAGTCTCTGAACCTCGTAGATCTGCCTCAATTGCTTGTGGAGCAGCTGTATTTGAAGTTTGCATGAAGCTTCCTCTATGGGCTTCGCAGGTATTGAGACAGCTAGCTCCTGAAATTACTTATCGAAGTTTAGTTGCACTTGGGATTGCTAGCATTCAGGGGTTGCCTGTCGCTTCATTTGAGAAAGATGATGCTGATCGCCTGTTTTTCTTTTATCGAAGTCAAGAGAAAGATAGTGATGCAGACAAAATCATTTACAGCAGCCCCCCTGGTTGGTTGAAACCACCTCCTCCTACTAGAAAAAGGTGTGAGCCAAGTCAAGTGGCAAGCCCTGGCCTTCAACATGGTGTTTTAACTGGGCAAGGTGGTGTTCAAAAAGCAGATGAAGAGGAAAAGGATACAAAACCGGTGAATGGAATTGGCACATCCTTAACTCCAGCTAGGCAGAGATTAAAAGTGTCTGCAATGAGGCCCATCCCTCATGTTCATCGCCATAGATTGACACTTTTTTCTGGACCTTCTGAGACAGATGGTTATGATGGTGCCCAAGTTGAAGCTAGTTTACCACTTGTTGTCCCTGCAAAGCGCAGTACTACTGGTTCAAGTTCTGCAACACAGAGAAGGTCATTTTCAGGCTCAGCTCAGTCTAAGCAGATTATTTCCTTGAACCCACTGCCCTTGAAAAAACATGGTTGTAGCAGAGGTCCAATCCAAACTTGCTCTGAGGAGGAATTTTTGAAAGATGTCATGGAGTTTCTAATGCTTCGAGGACATAGTCGGTTAATTCCTCAAGGTGGGCTTGCTGAGTTTCCTGATGCCATACTCAATGGGAAAAGACTTGATCTCTACAACTTGTATAAAGAGGTGGTTACCAGGGGAGGATTCCATGTTGGTAATGGCATCAATTGGAAAGGACAAATCTTCTCAAAGATGCGCAATTACACAACCACCAATAGAATGACTGGCGTTGGAAATACATTGAAAAGGCATTATGAAACATACCTTCTAGAATATGAATTAGCACATGATGATGTGGATGGAGAGTGCTGCTTATTGTGCCACAGTAGTGCAGCTGGGGATTGGGTGAATTGTGGCATATGTGGCGAGTGGGCCCACTTTGGATGTGACAGACGGCAAGGTCTTGGCGCATTTAAGGATTATGCAAAAACAGATGGACTAGAATATATTTGTCCTCATTGTAGTGTAACAAATTTCAAGAAGAAACCCTCAGGTGTTGCTGCTAATGGGTTTTCTCAGGGGTCAATGGCATCAAAACCCCTTTGA 2349 0.4308 MMFHPGGIPKQTCSLLAVTCGKNVELEFDEKLTQNQLKYPFPELTSSGRLEVQTLNNPEKEQFRKVLESYQPNFVYLQGEQLANGEVGSLIWQGEELSTSEAISELLGPTLPTAVYLEIPNGENLAETLHLKGVSYVIYWKNTFSCYAACHFRQAFLSAVQSSSTHTWDAFHLARASFEFYCVQNNQVFPGEKHDSNDNIGPHLLGDCLQINIDPPEVCEDDEESSSGSLPAIKIHDDEVNLRFLICGSPSIVDESLLRSLEDGLKALLTIEIRGSKLHGKFSAPPPPLQAATFSRGVVTMRCDMSTCSSAHISLLVSGSAQTCFIDQLLENHIKNEIIEKSQLVRAQIDEGNKQQVSEPRRSASIACGAAVFEVCMKLPLWASQVLRQLAPEITYRSLVALGIASIQGLPVASFEKDDADRLFFFYRSQEKDSDADKIIYSSPPGWLKPPPPTRKRCEPSQVASPGLQHGVLTGQGGVQKADEEEKDTKPVNGIGTSLTPARQRLKVSAMRPIPHVHRHRLTLFSGPSETDGYDGAQVEASLPLVVPAKRSTTGSSSATQRRSFSGSAQSKQIISLNPLPLKKHGCSRGPIQTCSEEEFLKDVMEFLMLRGHSRLIPQGGLAEFPDAILNGKRLDLYNLYKEVVTRGGFHVGNGINWKGQIFSKMRNYTTTNRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYICPHCSVTNFKKKPSGVAANGFSQGSMASKPL 782
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju05g2017 782 MobiDBLite consensus disorder prediction 438 498 - -
Alju05g2017 782 CDD PHD_ARID4_like 704 755 - -
Alju05g2017 782 CDD ARID 596 694 - -
Alju05g2017 782 SUPERFAMILY ARID-like 594 709 IPR036431 GO:0003677
Alju05g2017 782 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 698 761 IPR013083 -
Alju05g2017 782 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 8 777 IPR042293 -
Alju05g2017 782 Pfam ARID/BRIGHT DNA binding domain 597 694 IPR001606 GO:0003677
Alju05g2017 782 SUPERFAMILY FYVE/PHD zinc finger 697 761 IPR011011 -
Alju05g2017 782 MobiDBLite consensus disorder prediction 551 571 - -
Alju05g2017 782 SMART ARID_2 591 694 - -
Alju05g2017 782 Gene3D - 591 697 IPR036431 GO:0003677
Alju05g2017 782 SMART bright_3 595 699 IPR001606 GO:0003677
Alju05g2017 782 ProSiteProfiles ARID domain profile. 594 698 IPR001606 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju05g2017 Alju-ChrAlju05 52904553 52912498 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju05g2017 2 772 ARID Transcription Factor Family AT3G43240 59.407 0.0 925
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Alju05g2017 ARID 1.5e-14 CL0123