Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju05g2014 ATGGCTTCATCATCTTCTTCACCTAAAACAACAAGAAAGCCCGGGAAAGGTAGGCGCAAGATTGAGATTAAGAAGGTGGAACAAACCAGCAAGCGTCTTGTCACATTCTCAAAACGCAAACTTGGCCTCTTCCGCAAAGCCGCCGAACTATCTCTTCTCTGTGATTCCCAAATCGCCGTCATTGTCTTCTCCCAATTCGGCAAGGTCTTCTCCTCCGGCTACCCTGACCCTGACGCCGTCATCCGCCGCTATCTCTCCAGCGCCGCCTCCTCCTCCTCCTGCTCGCTCTCGGACCCTACGCCGGTTCATGATCCGGAAAGAGAATCAGCGATGTCGCCGCTGAGGCGGGAATTTGAAGAGGCCGTGAAGGTGTTGGAGGAGGAGAGGAAATTTGTGAATGCTGAGACTGGCGGGTCGGGTTGCGGGCATGGGTTATGGTGGAACCGTTCGGTTGAGGAGATGGGTTTGGAGGAAGTCGTGCAGTTCAAGGAGTGTGTTGAACAGTTGAGGCAGAATGTCGCCGCATTGGCAGAGGAGAAGAAGAAAAGCACTTGGCTGATCGATTCACAGTCGCCGCCGGTGACCACGGCGGAGGAGAAGAAGAGCACTTGGCTGATAGATTCACATTCGCGGCCGGTGACCACGGCGGAGGAGAAGAAGAGCACTTGGTTGATCGATTCACAGTTGCGGCCGGTGACCACGGCGGAGGAGGAGAAGTGCACTTGGCTGATCGATTCACAGTCGCCGCCCGGGACCACGGTGGAGGAGGAGGAGGAGAGCACTTGGCTAATCGATTCACAGTCGCCGCCGGTGTTGACCACGGCAGAGGAGAAGAAGAGCACATGGCTGATCGATTCACAGTTGCCACTGCCGGTGACCACGGCGGAGGAGAAGAAGTGCACTTGGCTGATCGATTCACAGTCGCCGCCGGTAACCACGGCGGAGGAGAAGAAGAGCACTTGGCTGATCCATTCACAGTCGCTGCTGCCGGTGACCACGGCGGAGGAGAAGAAGTGCAATTGGCTGATCGATACACAGTCGCCGCCGTGGTCAACAGCGGAGTCTATGTATCTCTCTATGTTGGACGACATGTTGGAGATTGATCAAACATGGGAATCTTGGGCTGCAAGAAACAGTTGGGATTCCATTGTTCCGTACAGCAGCGATCTTGGGCAATACTAG 1182 0.5541 MASSSSSPKTTRKPGKGRRKIEIKKVEQTSKRLVTFSKRKLGLFRKAAELSLLCDSQIAVIVFSQFGKVFSSGYPDPDAVIRRYLSSAASSSSCSLSDPTPVHDPERESAMSPLRREFEEAVKVLEEERKFVNAETGGSGCGHGLWWNRSVEEMGLEEVVQFKECVEQLRQNVAALAEEKKKSTWLIDSQSPPVTTAEEKKSTWLIDSHSRPVTTAEEKKSTWLIDSQLRPVTTAEEEKCTWLIDSQSPPGTTVEEEEESTWLIDSQSPPVLTTAEEKKSTWLIDSQLPLPVTTAEEKKCTWLIDSQSPPVTTAEEKKSTWLIHSQSLLPVTTAEEKKCNWLIDTQSPPWSTAESMYLSMLDDMLEIDQTWESWAARNSWDSIVPYSSDLGQY 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju05g2014 393 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 25 71 IPR002100 GO:0003677|GO:0046983
Alju05g2014 393 MobiDBLite consensus disorder prediction 91 112 - -
Alju05g2014 393 Coils Coil 115 135 - -
Alju05g2014 393 ProSiteProfiles MADS-box domain profile. 16 76 IPR002100 GO:0003677|GO:0046983
Alju05g2014 393 SUPERFAMILY SRF-like 17 87 IPR036879 GO:0003677|GO:0046983
Alju05g2014 393 PANTHER MADS BOX PROTEIN 18 174 - -
Alju05g2014 393 MobiDBLite consensus disorder prediction 1 23 - -
Alju05g2014 393 Coils Coil 159 179 - -
Alju05g2014 393 Gene3D - 29 98 IPR036879 GO:0003677|GO:0046983
Alju05g2014 393 SMART madsneu2 16 75 IPR002100 GO:0003677|GO:0046983
Alju05g2014 393 PRINTS MADS domain signature 18 38 IPR002100 GO:0003677|GO:0046983
Alju05g2014 393 PRINTS MADS domain signature 38 53 IPR002100 GO:0003677|GO:0046983
Alju05g2014 393 PRINTS MADS domain signature 53 74 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju05g2014 Alju-ChrAlju05 52879149 52880330 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju05g2014 13 177 Type I MADS-box Gene Family AT5G60440 34.637 3.78e-22 94.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Alju05g2014 SRF-TF 1.1e-18 No_clan