Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju05g2013 ATGTGTGGAGGTGCTATTATCTCCGATTTCATTCCGACACCGGAGGCCAGGTCTCGCCGGCTCACCGCTGATATCCTTTGGCCGGATTTGAAGAAACCCAGTTGTCGGAAACGATTCTCGAAGCCCGCTAGATCTGCATTCGGGGATGCGGACGATGATTTCGAAGCTGATTTTAGGGAGTTCAAGGACGAGTCTGATATCGATGAGGTGGATGTGGATGATGATTTGCTGTGCGATTTCAAGACCTTGGGTTTCTCTGCTGCCAAACCTCCCAAGCCTTCCAGATCCCTGTCTCGCGGATCCGGTGCTGTAGAATCTGTGAAATTCAATGGAAAAGCTAACAAGTCTGAGAAAAGAAAGAGGAAGAATCTCTATAGGGGAATCCGTCAACGCCCATGGGGAAAATGGGCAGCTGAGATCCGTGACCCAAGGAAAGGAGTCCGTGTCTGGCTTGGAACTTTCAAGACTGCTGAAGAAGCAGCTAGAGCCTATGATGCTGAAGCACGGAGGATTCGTGGTAAGAAAGCCAAGGTGAACTTTCCTGATGAGGCATCAGGCTCTCACCCAAAACGTTACAATGTAAAACACTCTGTCCAGCCCATTATGAGCCAGAAATTCAATTTTGGAAACAATCCAAAGGACTACTCCTGTCCCATGGGTCTGATGGAGCAGAAACCACCGGTTATTCAGTATGCTAACATGGGGGGCTTACCCAGCAGTGCAGATGGGCTCACATCTTTCACACCATCGGATGATGTTAATGTTCCTGTTTGTTTCAGTTCGGATCAAGTGAGTAATTCGTTTGATTACTCTAGTATTAGCTGGGGCGAACAGGGCCCAAAGACTCCTGACATCTCGTCAATGCTTTCTGCTTCTATAGAAGATGAATTTAAAGCTGTTAATGAGGCCAGCCAGAATACTGACATCCCTAACTCTCAGGGTGTGTTGCCAGTGGGAAATGATTCCGCAAAGACACTGTCTGAGGAACTTGCAGATATTGAATCCCAGTTGCAGTTCTTTCAGACACCTGACCTTCAAGGGAGCTGGGACGATGCTTCATTAGAAGCCTTGCTTGGTGAAAACACAGCTCAGGATGGTGACAACACAATGGACTTTTGGAGCTTTGATGATCTACCTTCCATGGCTGGGGGAGTTTTCTGA 1161 0.4789 MCGGAIISDFIPTPEARSRRLTADILWPDLKKPSCRKRFSKPARSAFGDADDDFEADFREFKDESDIDEVDVDDDLLCDFKTLGFSAAKPPKPSRSLSRGSGAVESVKFNGKANKSEKRKRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFKTAEEAARAYDAEARRIRGKKAKVNFPDEASGSHPKRYNVKHSVQPIMSQKFNFGNNPKDYSCPMGLMEQKPPVIQYANMGGLPSSADGLTSFTPSDDVNVPVCFSSDQVSNSFDYSSISWGEQGPKTPDISSMLSASIEDEFKAVNEASQNTDIPNSQGVLPVGNDSAKTLSEELADIESQLQFFQTPDLQGSWDDASLEALLGENTAQDGDNTMDFWSFDDLPSMAGGVF 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju05g2013 386 CDD AP2 125 182 IPR001471 GO:0003700|GO:0006355
Alju05g2013 386 Pfam AP2 domain 125 173 IPR001471 GO:0003700|GO:0006355
Alju05g2013 386 PANTHER DNA-BINDING DOMAIN 101 274 IPR044808 GO:0003700|GO:0009873
Alju05g2013 386 MobiDBLite consensus disorder prediction 88 121 - -
Alju05g2013 386 SUPERFAMILY DNA-binding domain 124 183 IPR016177 GO:0003677
Alju05g2013 386 Gene3D AP2/ERF domain 124 182 IPR036955 GO:0003700|GO:0006355
Alju05g2013 386 PRINTS Ethylene responsive element binding protein signature 147 163 IPR001471 GO:0003700|GO:0006355
Alju05g2013 386 PRINTS Ethylene responsive element binding protein signature 125 136 IPR001471 GO:0003700|GO:0006355
Alju05g2013 386 FunFam Ethylene-responsive transcription factor 2 123 182 - -
Alju05g2013 386 SMART rav1_2 124 187 IPR001471 GO:0003700|GO:0006355
Alju05g2013 386 ProSiteProfiles AP2/ERF domain profile. 124 181 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju05g2013 Alju-ChrAlju05 52871314 52873695 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju05g2013 1 386 AP2-EREBP Transcription Factor Family AT1G53910 44.198 6.76e-66 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Alju05g2013 AP2 5.8e-12 CL0081