Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju05g1977 ATGAAGGTCTGTGAAATTTATAGTGAAGCTGAAGGATCCGATCCTGATTCGTTTTTGGATGATTTGGAAGAAGATCCTGATTTTGACATAACCGAAGAAACCTATAGCAGGTTTTCCAACCTCTCAATCGAAAAGAACAAGGCCAAGACGAGTATTTTTCATGGTGAACTTTCGCGAATGGAGATTGAACCAGAAGAGCAGAAGACTGAACCCGATCTTGATGAGAATGATAAGAAAAGTTTTGAGAAAGTACAAAAAATCATAGAAGCAAAAGAATGGGAGAAACTAAAAATACCTGAATGCAAGTTGTATCTGAGGAAGAATGGGCTGAGATTGACAGGAAATAAGGACACTCTCATTCAACGAATAAGGGAGCATCTAGAGATTATAAATGGTGGAGGAGAGAGGAAGTACCCGCCTTCTAGCTTTGTTCAGAATTGTAAAGGTGATGCATGCACTGGTGATGTTGTTCTGTTTGAGCAAAATATTTACGAAATGTTCAGCGTAGTATCTAGGAGTGCCAGTGGTCCACCATGTGGCAAAAGGATTGTTGCAGGCCGTATAGTGAAGGAAAGCTATGGTGCTGCAAAGCAGCAACATACATTTACGATTGAAGTACTGTGGAGCAAAGGAGAGAAGCCACTTCCTCCACTATATCCCCTGCTGATTAAGGGTCGAAACCTTTATAGGTTGAAGACTATGAGACAGAGATGGGAAGATGAAGGGAAAAGGCAGAAAATTTTGATGGAAAAACACTCCAGGGGAAATGTTGCAAGAGCCAATAGAGAAGCAAGGATAGAAGAAAAGGAGAAGAGGAAAACAATTAGGGAAAACAGGGTTTCCAAAAAGGAGACATCAAATAACCAATCTCAATCACATCCACCCACGACAAAGTCACAGTACCAACAACAAGAATCTAGACGTATCAACCCAGTAAAGCCAGAATTTCTTGTTGACCAAGGCGAAATAGTTGCAAAAAAGCCTCACAATTTGAAAGAGAAACTCATTACTACTGAGAATTACCCTTGCAGTGATATGACAAACAGGGTTGCAGAATGGCCTTGTCAACATCAAGAATCTAGACGCATCAATCCAGCAAAGCCAGAATTTTTCTTTGACCAAGGCGAAAGAGTTGCAACAAGGCCTCACCATTTCAAAGAGAAATTCATTACTACTGAGAATTACCCTTGCAGTGATATGACAAACAGGGTTGCAGAATGGTCTTATCAACATCAAGAATCTAGATGCATCAATTCAGCAAAGCCAGAATTTTTCTTTGGCCAAGGCGAAAGAGTTGCAACAAGGCCTCACCATTTAGAGAAACTCATTACTGCTGAGAATTACCCTTGCAATGCTATGACAAACAGGTTTGCAGAATGGCCTTACATTAGAAAACCTTTGACGAACGCAAATTACTTGTTTCCGTTGACCCTAAACAGAGAATCCTTTCAGCAAAAGCAACCTTGCAAATATTATGACCAAGGCAGGTGTCGTTTTGGAGACAACTGCAAATTTTTGCATGGTGTGAGATCATAG 1536 0.4056 MKVCEIYSEAEGSDPDSFLDDLEEDPDFDITEETYSRFSNLSIEKNKAKTSIFHGELSRMEIEPEEQKTEPDLDENDKKSFEKVQKIIEAKEWEKLKIPECKLYLRKNGLRLTGNKDTLIQRIREHLEIINGGGERKYPPSSFVQNCKGDACTGDVVLFEQNIYEMFSVVSRSASGPPCGKRIVAGRIVKESYGAAKQQHTFTIEVLWSKGEKPLPPLYPLLIKGRNLYRLKTMRQRWEDEGKRQKILMEKHSRGNVARANREARIEEKEKRKTIRENRVSKKETSNNQSQSHPPTTKSQYQQQESRRINPVKPEFLVDQGEIVAKKPHNLKEKLITTENYPCSDMTNRVAEWPCQHQESRRINPAKPEFFFDQGERVATRPHHFKEKFITTENYPCSDMTNRVAEWSYQHQESRCINSAKPEFFFGQGERVATRPHHLEKLITAENYPCNAMTNRFAEWPYIRKPLTNANYLFPLTLNRESFQQKQPCKYYDQGRCRFGDNCKFLHGVRS 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju05g1977 511 SUPERFAMILY CCCH zinc finger 485 508 IPR036855 GO:0046872
Alju05g1977 511 Gene3D SAP domain 73 139 IPR036361 -
Alju05g1977 511 MobiDBLite consensus disorder prediction 245 283 - -
Alju05g1977 511 SMART c3hfinal6 484 509 IPR000571 GO:0046872
Alju05g1977 511 ProSiteProfiles Zinc finger C3H1-type profile. 483 510 IPR000571 GO:0046872
Alju05g1977 511 Pfam SAP domain 94 127 IPR003034 -
Alju05g1977 511 Pfam CCCH-type zinc finger 488 508 IPR041367 -
Alju05g1977 511 MobiDBLite consensus disorder prediction 284 307 - -
Alju05g1977 511 MobiDBLite consensus disorder prediction 1 24 - -
Alju05g1977 511 ProSiteProfiles SAP motif profile. 93 127 IPR003034 -
Alju05g1977 511 Gene3D - 467 511 - -
Alju05g1977 511 Coils Coil 257 277 - -
Alju05g1977 511 PANTHER SAP DOMAIN-CONTAINING PROTEIN 21 509 - -
Alju05g1977 511 MobiDBLite consensus disorder prediction 245 307 - -
Alju05g1977 511 SUPERFAMILY SAP domain 82 128 IPR036361 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju05g1977 Alju-ChrAlju05 52478493 52482098 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Alju05g1977 SAP 4.3e-09 CL0306