Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju05g1964 ATGAAGTTCTTGAGCTGGCTACAACACAAACTCGGAGCCAACAGATCAATTCCAAACACCTATTCGTCCACTACTACTTATCACACAAAACAAGAGACCCGAGAAGAATTCAGCGATTGGCCGCATGGTTTGCTAGCGATTGGAACTTTCGGGAACAAGAACGAAATCAAACCAAATCCAGAGCCCCAAAACGCTCATGGCGAAGAAGACGATCCAACCTCGTTATCCGACGAAATATCAGATTTCACTCCTGAAGAAATTGGGAACCTCCAGAGAGAGCTCAACAAGCTCTTGAGACAGAAACCTAATAATGTGGAGAAGGAGATCGTCGAACTCCCTCTCGACAGGTTTCTCAACTGCCCATCCTCCCTGGAGGTCGATCGAAGGATCAGTAATGCTCTGTGCAGCAGCGATTCGGATGATAAAGAAGATGATATGGAGAAGAGACTTACTGTCATCCTTGGTAAATGCAAGGACATTTGTGCAGATAATACCAAGAAGGCAATCGGGAAGAGGCCAATTTCTTTTCTCCTTAAGAAATTGTTCGTTTGTAGAAGCGGATTTGCGACGCCTCCAAACCCTAAAGATATCCTGCAAGAATCAAAAATGGAAAAGCTTTTAAGGACAATTCTTCACAAGAAAATAAAATCCCAAACTTCTCGATCAGCGTCAATGAAGAGGTGCTTGGAGGACAAGAAGATGGCGATGAGGAATGATCTTGATGAGGAAGAAGAAACAGAGGAGAGAACTGATGATGGCTGTAAATGGGTTAAGACTGATTCCGAATGCCCTGAGGATGTCTACCTTTCCACTTCACTCGCTAGTTATCTTGACAAGAAACTTCTTGTATTGCTGAGAGATGGTAGAAAGCTAATGGGAACACTTCGCTCTTTTGATCAATTTGCTAATGCTGTTCTTGAGGGTGCGTGTGAGAGGGTTATTGTCGGTGATCTGTATTGCGATATCCGTTTGGGTCTCTATGTAATCCGTGGGGAGAATGTTGTTTTGATTGGTGAGCTGGACATGGAAAAAGAGGAACTTCCCCCACATATGGCACGTGTTTCAGCTGCAGAAATTAGAATGGCACAAAAAGCAGAAAGGGAGGCTACAGATCTGAAGGGAACAATGAGGAAGAGGATGGAGTTCCTGGACATGGACTAG 1161 0.4427 MKFLSWLQHKLGANRSIPNTYSSTTTYHTKQETREEFSDWPHGLLAIGTFGNKNEIKPNPEPQNAHGEEDDPTSLSDEISDFTPEEIGNLQRELNKLLRQKPNNVEKEIVELPLDRFLNCPSSLEVDRRISNALCSSDSDDKEDDMEKRLTVILGKCKDICADNTKKAIGKRPISFLLKKLFVCRSGFATPPNPKDILQESKMEKLLRTILHKKIKSQTSRSASMKRCLEDKKMAMRNDLDEEEETEERTDDGCKWVKTDSECPEDVYLSTSLASYLDKKLLVLLRDGRKLMGTLRSFDQFANAVLEGACERVIVGDLYCDIRLGLYVIRGENVVLIGELDMEKEELPPHMARVSAAEIRMAQKAEREATDLKGTMRKRMEFLDMD 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju05g1964 386 Pfam LSM domain 272 338 IPR001163 -
Alju05g1964 386 CDD LSm1 270 340 IPR034104 GO:0000956
Alju05g1964 386 SMART Sm3 271 339 IPR001163 -
Alju05g1964 386 SUPERFAMILY Sm-like ribonucleoproteins 272 347 IPR010920 -
Alju05g1964 386 ProSiteProfiles Sm domain profile. 268 343 IPR047575 GO:0003723
Alju05g1964 386 Coils Coil 226 246 - -
Alju05g1964 386 Gene3D - 270 383 - -
Alju05g1964 386 MobiDBLite consensus disorder prediction 50 80 - -
Alju05g1964 386 PANTHER OS03G0406300 PROTEIN 1 263 IPR044683 GO:0009630|GO:0040008
Alju05g1964 386 FunFam U6 snRNA-associated Sm-like protein LSm1 270 383 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju05g1964 Alju-ChrAlju05 52355630 52365088 Dispersed/Wgd