Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju05g1940 ATGCCCTGCAAAACCTTCCTGCTTGGCTGTTTCAGGGCCAAGAATAATAAAAAGCCATCCTCCGATCCAACTCTAGTCTCCAGAAAGGCACCTTCTAGGAGACTTTCCCTCTCTGATTTGAGCAACGCTTCTTCAATCTCTATTATGAGTGATTTATCAAACTCTGTTTTGGGGTCAAGTCTTCATGTTTTCACCTACAAGGAGCTTCAGGAGATCACTAACAACTTCAGCAAAAGCAGTGTTCTCGGAGAAGGCGGCTTTGGCAAGGTATATAAAGGCTTCATTGATGACAAGCTAAGGCCTGGATTAAAACCTAAAGTTGTGGCAGTTAAGGTTTTAGACTTGGATGGGAAACAGGGCCATAGAGAGTGGTTGGCAGAAGTTATATTTCTGGGGCAGTTGAAGCATCCGAATCTGGTGAACCTAATTGGGTATTGCTGTAAAGACGAGAACAGGCTATTGGTATATGAATACATGGAAAGGGGCAATTTAGAGGACAAGCTTTTTGAAGGCTACTTAGCAGCCTTGCCATGGCTAACAAGAATCAAAATAGCAATTGGGGCAGCAAAAGGTCTTGCCTTTCTTCATGAAGAAGAGAAACCAGTCATATACAGAGATATTAAAGCCTCAAACATACTATTAGATGCCGATTACAATGCTAAACTCTCTGATTTTGGGCTAGCAATAGACGGTCCAGACGAAGATCAGAGCCACATCACAACTCGAGTTATGGGTACGCACGGCTATGCTGCTCCCGAGTATATCATGACAGGACATTTAACAACAATGAGCGATGTATACAGCTACGGGGTGGTTCTCTTAGAGCTACTTACAGGAAAGAGATCTGTGGACAAGAATCGACCATCGAGAGAGCAGGATTTAGTAGAATGGGCAAGACCACTTCTGAAAAATACCCAGAAACTCGAAAGAATAATGGATCCAAGACTTGAGGGTCAATATTCAGTTGAAGGAGCCAAAAAAGTGGCTGCTTTGGTTCACCAATGTCTGAGCCATCAAGCCAAGACTCGACCATCAATGCGAACCACAGTCAAGTCATTAGAGTCTATCATGAACCTCACCGACAACATTCCAGTGAGCCACTTTGTCTATGTGGTTCCTGGTAATGGTGAAGTGGACGGTTGGGTACAAAGTAGTAAAATTGAAAAAGAGGATAAAGTGGAGACGAAGGAGAAGGGCCGGCCCAGGAATCGGAGAAATCGAAGACGTAAACGACAGATTAAACCCCTGAAGTCTCGTGCCGTTTACACTGATACGACATTGTATAAATCTCTTGGTACTAGTTTGTACAATCAAATTAGTGTGATAAATTGA 1332 0.4324 MPCKTFLLGCFRAKNNKKPSSDPTLVSRKAPSRRLSLSDLSNASSISIMSDLSNSVLGSSLHVFTYKELQEITNNFSKSSVLGEGGFGKVYKGFIDDKLRPGLKPKVVAVKVLDLDGKQGHREWLAEVIFLGQLKHPNLVNLIGYCCKDENRLLVYEYMERGNLEDKLFEGYLAALPWLTRIKIAIGAAKGLAFLHEEEKPVIYRDIKASNILLDADYNAKLSDFGLAIDGPDEDQSHITTRVMGTHGYAAPEYIMTGHLTTMSDVYSYGVVLLELLTGKRSVDKNRPSREQDLVEWARPLLKNTQKLERIMDPRLEGQYSVEGAKKVAALVHQCLSHQAKTRPSMRTTVKSLESIMNLTDNIPVSHFVYVVPGNGEVDGWVQSSKIEKEDKVETKEKGRPRNRRNRRRKRQIKPLKSRAVYTDTTLYKSLGTSLYNQISVIN 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju05g1940 443 MobiDBLite consensus disorder prediction 401 415 - -
Alju05g1940 443 ProSitePatterns Serine/Threonine protein kinases active-site signature. 202 214 IPR008271 GO:0004672|GO:0006468
Alju05g1940 443 FunFam Serine/threonine-protein kinase BIK1 43 158 - -
Alju05g1940 443 Pfam Protein tyrosine and serine/threonine kinase 79 353 IPR001245 GO:0004672|GO:0006468
Alju05g1940 443 ProSitePatterns Protein kinases ATP-binding region signature. 82 111 IPR017441 GO:0005524
Alju05g1940 443 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 159 364 - -
Alju05g1940 443 Gene3D Phosphorylase Kinase; domain 1 56 158 - -
Alju05g1940 443 SUPERFAMILY Protein kinase-like (PK-like) 51 354 IPR011009 -
Alju05g1940 443 SMART serkin_6 76 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Alju05g1940 443 PANTHER OS01G0588500 PROTEIN-RELATED 37 356 - -
Alju05g1940 443 CDD STKc_IRAK 82 356 - -
Alju05g1940 443 ProSiteProfiles Protein kinase domain profile. 76 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Alju05g1940 443 Gene3D Transferase(Phosphotransferase) domain 1 159 366 - -
Alju05g1940 443 MobiDBLite consensus disorder prediction 391 415 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju05g1940 Alju-ChrAlju05 52020505 52022749 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju05g1940 60 368 Glycoside Hydrolase AT3G07070 49.521 1.06e-101 308
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Alju05g1940 PK_Tyr_Ser-Thr 3.5e-48 CL0016