Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju05g1934 ATGAGCGATTGGATGGGGTTTTCTCTGACTCCACACTTGAGGATTGATGAAGTGTATGGGAATGGCAGAGAAAACCAAGAAGAAGAACACCGTGGAGGCTATCCTCATCCTTCTCATCATCCTCGCTTGTCGGTTATGCCTTTAAGATCAGATGGCTCTCTCTGTGTTGCTGAAAACCCTTTTAGGCACTCTGGCTCAGCTGAAGAATGGAGGTATGATAATGGAGTAGGAGGAGGAAGCTCCAATGAAGAAGGTCCGAAGCTTGAAGATTTCTTGGGTTGTTACTCAAACTCCTCTGATATTGCTGAAACCAAAGTGTATTGCCAAGGAAGTACACAGCAACAAGACCAAGACGAAGACCAGAACAACACTTCCAGCAGAATCAATGTGAATGTGACCCCAAGCTTCAGCACCAACACTGAGATAGAACCTAGTGGTGAAAATTTCACAAACCCACCTTCCTTAATCCAATCTTTTCATGCATACAATGACGGTAGCCAGAGAGCTTTGATCCCAAATAATGGCATGTACAAGTCCTGGTTGGCTCAATCTTCTGCTGCTGAAGTAAATGGTTATAACTACCAATCTCTAGCCCTAACTATGAGTCCTAGTGTACCAAACACTCTTTGTGGTGCAATTTCACCGGTTCAAGTAGTGGAAGATGATGCTCGTAAAAGGTCATTGACAAAATCTCTGGCTGATAGAGAACCTGTTCCTCGCAAATCTATTGATACCTTTGGTCAAAGAACATCTCAATATAGAGGTGTCACAAGGCATAGATGGACTGGGAGATATGAGGCCCATTTGTGGGATAATAGTTGCAGGAAGGAAGGGCAAACAAGGAAAGGAAGGCAAGGTGGTTATGATAAGGAAGAAAAAGCAGCAAGGGCTTATGACTTAGCTGCGCTGAAGTATTGGGGTCCAACTACTCACATAAATTTCCCTCTAAGCACCTACGAGAAGGAACTTGAAGAGATGAAACACATGACTAGGCAAGAATTTGTGGCCAATCTAAGGAGGAAGAGCAGTGGATTTTCAAGAGGTGCTTCTGTGTATAGGGGCGTGACAAGACACCATCAACATGGAAGGTGGCAAGCTAGGATTGGTAGAGTTGCAGGAAACAAAGACTTGTATCTCGGTACATTTAGCACGCAAGAGGAAGCTGCAGAAGCATATGACATCGCCGCAATCAAGTTCAGGGGAACAAGTGCCGTGACCAACTTTGATATAAGTAGGTATGATGTGAAGAGAATATGTTCAAGCTCGACCCTCATAGCCGGAGATCTCGCGAAGAAGTCCCCAAAAGAGTTAGCTCCCGGTGTCATCGCCGCCGCCGCCACTACCGACGAGGCAGCTCATCATCAGCAACAGCCACAGCCCTTTTTGGCGATAACAAATGGCGAGCACTCGTCTGATGAGTTGGCCAACATGGTTTGGAATGATGATGGAAACCTCAATGAGAAACAGGTGAATGATCATGGGACTTCCGAGAACAGCAAGAATAACAACAACAATAATGCTACTAAGAATGTGTCAAGCTCAGAAGGAAGTCCCAAGTGTTGTGTGGGAATGGGAAATGAGTTTGGGGTGAGTGGTACTTCAGAGTTTGGACATGGGTTCTTCTCGTTGCAGGGGCCAAAGTATAATGATAATGATGAAGAAGATGATGGGAACAACAACGAGGACGACAACGGTAATGATAACATGAATAATGATGACAACAATCGCATTGGGAACATGGGTCTGGTTCATCAAGTTCCTATGTTTGCTTTGTGGAATGAATGA 1785 0.4487 MSDWMGFSLTPHLRIDEVYGNGRENQEEEHRGGYPHPSHHPRLSVMPLRSDGSLCVAENPFRHSGSAEEWRYDNGVGGGSSNEEGPKLEDFLGCYSNSSDIAETKVYCQGSTQQQDQDEDQNNTSSRINVNVTPSFSTNTEIEPSGENFTNPPSLIQSFHAYNDGSQRALIPNNGMYKSWLAQSSAAEVNGYNYQSLALTMSPSVPNTLCGAISPVQVVEDDARKRSLTKSLADREPVPRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCRKEGQTRKGRQGGYDKEEKAARAYDLAALKYWGPTTHINFPLSTYEKELEEMKHMTRQEFVANLRRKSSGFSRGASVYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGTSAVTNFDISRYDVKRICSSSTLIAGDLAKKSPKELAPGVIAAAATTDEAAHHQQQPQPFLAITNGEHSSDELANMVWNDDGNLNEKQVNDHGTSENSKNNNNNNATKNVSSSEGSPKCCVGMGNEFGVSGTSEFGHGFFSLQGPKYNDNDEEDDGNNNEDDNGNDNMNNDDNNRIGNMGLVHQVPMFALWNE 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju05g1934 594 Gene3D AP2/ERF domain 251 317 IPR036955 GO:0003700|GO:0006355
Alju05g1934 594 Gene3D AP2/ERF domain 351 411 IPR036955 GO:0003700|GO:0006355
Alju05g1934 594 SUPERFAMILY DNA-binding domain 251 317 IPR016177 GO:0003677
Alju05g1934 594 ProSiteProfiles AP2/ERF domain profile. 351 409 IPR001471 GO:0003700|GO:0006355
Alju05g1934 594 FunFam AP2-like ethylene-responsive transcription factor 350 411 - -
Alju05g1934 594 ProSiteProfiles AP2/ERF domain profile. 252 315 IPR001471 GO:0003700|GO:0006355
Alju05g1934 594 MobiDBLite consensus disorder prediction 108 133 - -
Alju05g1934 594 PRINTS Ethylene responsive element binding protein signature 391 411 IPR001471 GO:0003700|GO:0006355
Alju05g1934 594 PRINTS Ethylene responsive element binding protein signature 253 264 IPR001471 GO:0003700|GO:0006355
Alju05g1934 594 Pfam AP2 domain 350 401 IPR001471 GO:0003700|GO:0006355
Alju05g1934 594 Pfam AP2 domain 252 307 IPR001471 GO:0003700|GO:0006355
Alju05g1934 594 MobiDBLite consensus disorder prediction 554 568 - -
Alju05g1934 594 MobiDBLite consensus disorder prediction 541 579 - -
Alju05g1934 594 MobiDBLite consensus disorder prediction 483 518 - -
Alju05g1934 594 SUPERFAMILY DNA-binding domain 350 411 IPR016177 GO:0003677
Alju05g1934 594 CDD AP2 350 411 IPR001471 GO:0003700|GO:0006355
Alju05g1934 594 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 82 499 - -
Alju05g1934 594 FunFam AP2-like ethylene-responsive transcription factor ANT 251 317 - -
Alju05g1934 594 CDD AP2 251 317 IPR001471 GO:0003700|GO:0006355
Alju05g1934 594 SMART rav1_2 252 321 IPR001471 GO:0003700|GO:0006355
Alju05g1934 594 SMART rav1_2 351 415 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju05g1934 Alju-ChrAlju05 51959977 51963309 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju05g1934 1 440 AP2-EREBP Transcription Factor Family AT1G72570 50.415 1.23e-133 395
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Alju05g1934 AP2 1.2e-09 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju05g1934 05 51959977 51963309 Alju05g1934 05 51959977 51963309 ECH