Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju05g1931 ATGGCTTCTGAGAGTGATGATTGTAATAAGAGGAAAGTGGAGCCAATTAAAGCCATTACAAATGTGCCTCTTAGTAAAGCAGCATGGACACCTGAAGAAGATAGGAAACTAGCTGAGGCTATTTCAGTTCATGGGGCCAAAAGGTGGAAGTCCATTGCATCCAAAGCAGGACTTAATCGGTGTGGTAAGAGTTGTAGGTTGAGATGGTTAAATTATCTCAGACCCAACATCAAGAGGGGAAACATATCAGCCCAAGAAGAGGATTTGATTCTTCGCCTTCATAAACTCCTTGGAAACAGGTGGTCTTTAATCGCTGGGAGACTACCAGGCCGAACAGATAATGAGATAAAGAATTATTGGAATTCTCATTTGAGCAAGAAAATAAAGTTGAAGGAGAAGCACTCAAGTGGGAATTCAACAATAAGACAAGAAAACCAACAAAATGTGGTGGTCGTAGAAAATAAGATTCCTCAAGAAGAAGAAGATAAGCAAATCAGGGAAGTGATTCCTACTGAGGAAGCTGAAAAAGACTCGTTATCAAAACACAGTAGTTTTGATGTGGACGGCTTCTTTGATTATTCCGTAGAGGAAGGTCCATTGAATCTGGAGTGGGTTAGCCAATTCCTTGAACTTGATGATACAACTCTCGGACTCTTCTTACAATAA 666 0.4039 MASESDDCNKRKVEPIKAITNVPLSKAAWTPEEDRKLAEAISVHGAKRWKSIASKAGLNRCGKSCRLRWLNYLRPNIKRGNISAQEEDLILRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNSHLSKKIKLKEKHSSGNSTIRQENQQNVVVVENKIPQEEEDKQIREVIPTEEAEKDSLSKHSSFDVDGFFDYSVEEGPLNLEWVSQFLELDDTTLGLFLQ 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju05g1931 221 ProSiteProfiles Myb-like domain profile. 74 124 IPR001005 -
Alju05g1931 221 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 21 73 IPR017930 -
Alju05g1931 221 SUPERFAMILY Homeodomain-like 24 120 IPR009057 -
Alju05g1931 221 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 74 128 IPR017930 -
Alju05g1931 221 CDD SANT 28 73 IPR001005 -
Alju05g1931 221 ProSiteProfiles Myb-like domain profile. 21 73 IPR001005 -
Alju05g1931 221 CDD SANT 83 124 IPR001005 -
Alju05g1931 221 Gene3D - 82 155 - -
Alju05g1931 221 FunFam MYB-related transcription factor 25 78 - -
Alju05g1931 221 Gene3D - 27 78 - -
Alju05g1931 221 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 21 171 - -
Alju05g1931 221 SMART sant 78 126 IPR001005 -
Alju05g1931 221 SMART sant 25 75 IPR001005 -
Alju05g1931 221 Pfam Myb-like DNA-binding domain 28 73 IPR001005 -
Alju05g1931 221 Pfam Myb-like DNA-binding domain 79 124 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju05g1931 Alju-ChrAlju05 51910611 51912213 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju05g1931 26 161 MYB Transcription Factor Family AT5G40330 53.676 8.44e-52 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Alju05g1931 Myb_DNA-binding 5.2e-18 CL0123