Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju05g1929 ATGGCTTGTAGAAGTGATGATAATAAGAGCAAAGTGATGAAGTCAAATGAAGCTATGAAGAACGTAGCTATTAGCAAAGGAGCTTGGACACCGGAGGAAGATAGGAAACTAGCTGAGGTTATTGCAGTTCAGGGGGCCAAGAAGTGGAAGTCCATCGCTGCAAAAGCTGGCCTTAATCGTGGAGGTAAGAGTTGTAGGCTTAGATGGTTGAACTATCTTAGACCCAACATTAAGAGAGGAAACATATCAGAACAAGAAGAGGATTTGATACTTCGACTTCATAAACTCCTCGGAAACAGATGGTCTTTAATTGCGGGAAGGCTGCCGGGAAGAACAGACAATGAGATAAAGAACTACTGGAATTCTCACTTGTGCAAGAAGATAAGACAGAGTGAGCAGCAAGAAAGTGGGATTTCAACAAGACAAGATCAGAAACAAAGAGTTGTATTAGAGGAAGCAGTTCCTGAAGAGAATTATAGAGTGCGAACTGATGAAGAAGACACATCAACAGAATTCAATTTTGATGATAATGTGGATGGGTTCTTTGACATTTCCAATGACGAAGAAGGTCATCATCAATTGAATCTGGAGTGGGTTAATCAATTCCTTGAACTTGATGAGGCAACTCTTGGACTTTTCTCACAATAA 648 0.4059 MACRSDDNKSKVMKSNEAMKNVAISKGAWTPEEDRKLAEVIAVQGAKKWKSIAAKAGLNRGGKSCRLRWLNYLRPNIKRGNISEQEEDLILRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNSHLCKKIRQSEQQESGISTRQDQKQRVVLEEAVPEENYRVRTDEEDTSTEFNFDDNVDGFFDISNDEEGHHQLNLEWVNQFLELDEATLGLFSQ 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju05g1929 215 SUPERFAMILY Homeodomain-like 24 120 IPR009057 -
Alju05g1929 215 CDD SANT 28 73 IPR001005 -
Alju05g1929 215 CDD SANT 83 124 IPR001005 -
Alju05g1929 215 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 21 73 IPR017930 -
Alju05g1929 215 ProSiteProfiles Myb-like domain profile. 74 124 IPR001005 -
Alju05g1929 215 FunFam MYB-related transcription factor 25 78 - -
Alju05g1929 215 Gene3D - 26 78 - -
Alju05g1929 215 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 74 128 IPR017930 -
Alju05g1929 215 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 13 156 - -
Alju05g1929 215 Gene3D - 81 152 - -
Alju05g1929 215 ProSiteProfiles Myb-like domain profile. 21 73 IPR001005 -
Alju05g1929 215 Pfam Myb-like DNA-binding domain 26 73 IPR001005 -
Alju05g1929 215 Pfam Myb-like DNA-binding domain 79 124 IPR001005 -
Alju05g1929 215 SMART sant 78 126 IPR001005 -
Alju05g1929 215 SMART sant 25 75 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju05g1929 Alju-ChrAlju05 51867190 51868467 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju05g1929 1 133 MYB Transcription Factor Family AT5G52600 57.143 4.19e-50 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Alju05g1929 Myb_DNA-binding 4.8e-17 CL0123