Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju05g1927 ATGGGAAGGAGTCCTTGCTGTGCAAAGGAAGGTTTGAATAGAGGAGCATGGACTGCTGCTGAAGACAAGATTCTCACTTACTACATTAAGATTCATGGTGAAGGAAAATGGCGACACCTTCCCAAAAGAGCAGGTCTGAAGAGATGTGGGAAGAGTTGTAGGCTGAGATGGTTAAATTATCTAAGACCTGATATCAAAAGAGGAAATATTACTCGTGACGAAGAGGATCTCATTATCAGACTTCACAATCTTCTTGGAAATAGGTGGTCTTTGATAGCTGGGCGACTACCGGGACGCACAGACAATGAAATAAAGAACTATTGGAACACTAACATCGGAAAGAAGCTTCAAAATGAGAATAAAGAACTTGGCTCCTCCTCAAGTTTAGCCGGGCAAGACTCCGACCCCGACCCGGATCCCGAATCTGGCCTAAAGCCCCCACAAAAAACGACGACGTCTGGTCCATACCTGATTCGAACCAAAGCAACAAGGTGCACCAAGGTGATACTGAGCCAAGAACTCCAACCATTAATGGCTGCATCACATTCTTCAACTCGTAATAATAATGATAATCACATGAAAATAGAGGCTCCATCACCTTTCGTGGATTCCGAGGGATTAACAAACAACAATGTTTTGGATTTCATGGTGGATAATTTTGAGATTGACGAGAATGTCTTTTCAGATCTTATGAATATGGAAGTACCGTCTTGTTTTGAGAATGAAGTTCTAGCAATGGAAGCAGCAGCAGCAGACAACAACAGTAGTGGTGATCAACAAAGTTGTTATCATTTGTGTCCTCATCCCATTTCTAATAATGAAACCTGCTTCATTAATAATGTTTCCGATGATTCAATATTGCATAGCTCCGAGGTTTTTCAATCAATGTCGGCTCTCATGGAGATCGAATTCGATTGGCTTTCATATATATTGTCTTATTCACATTGA 948 0.4135 MGRSPCCAKEGLNRGAWTAAEDKILTYYIKIHGEGKWRHLPKRAGLKRCGKSCRLRWLNYLRPDIKRGNITRDEEDLIIRLHNLLGNRWSLIAGRLPGRTDNEIKNYWNTNIGKKLQNENKELGSSSSLAGQDSDPDPDPESGLKPPQKTTTSGPYLIRTKATRCTKVILSQELQPLMAASHSSTRNNNDNHMKIEAPSPFVDSEGLTNNNVLDFMVDNFEIDENVFSDLMNMEVPSCFENEVLAMEAAAADNNSSGDQQSCYHLCPHPISNNETCFINNVSDDSILHSSEVFQSMSALMEIEFDWLSYILSYSH 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju05g1927 315 Gene3D - 14 66 - -
Alju05g1927 315 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Alju05g1927 315 SMART sant 13 63 IPR001005 -
Alju05g1927 315 SMART sant 66 114 IPR001005 -
Alju05g1927 315 CDD SANT 16 61 IPR001005 -
Alju05g1927 315 MobiDBLite consensus disorder prediction 121 157 - -
Alju05g1927 315 FunFam MYB-related transcription factor 13 66 - -
Alju05g1927 315 Gene3D - 70 134 - -
Alju05g1927 315 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Alju05g1927 315 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 187 - -
Alju05g1927 315 CDD SANT 71 112 IPR001005 -
Alju05g1927 315 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Alju05g1927 315 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
Alju05g1927 315 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Alju05g1927 315 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Alju05g1927 315 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju05g1927 Alju-ChrAlju05 51847510 51849277 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju05g1927 1 136 MYB Transcription Factor Family AT4G38620 67.857 3.95e-62 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Alju05g1927 Myb_DNA-binding 1.1e-12 CL0123