Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju05g1925 ATGGGAAGGAGTCCTTGCTGTGCAAAGGAAGGTTTGAACAAAGGAGCATGGACAGCCATTGAAGACAAGATTCTCACTGATTACATTAAGATTTACGGCGAAGGAAAATGGCGACACCTTCCCAAAAGAGCAGGTCTGAAGAGATGTGGGAAGAGTTGTAGGCTGAGATGGTTAAATTATCTAAGACCTGATATCAAAAGAGGAAATATTACTCGTGACGAAGAGGATCTCATTATCAGACTTCACAATCTTCTGGGAAACAGGTGGTCTTTGATAGCTGGACGACTACCAGGACGAACAGACAATGAAATAAAGAATTATTGGAACACCAACATCGGAAAGAAGCTTCAAAATAATGGTAACTCAAAAACAAAGTCCTTGCCCACTTCAAGCGGCTCGCCCCCAAGCCGAGCCAGACAGGACAAGGACATGGACCCGGACCTGGACCCAAAAGCCCCCCAAAAAACGGCCGGTTCATGCTTGGTACTAACCAAAGCAACAAGGTGCACCAAAGTGATAGTGAACAGAGAAAACCAACCATTAAAGGGCGTACCATGTTTGATCATTCATGATGAGGACGAGAAAGTTAGGTGTCACCGTGATGAGAAAATAATGGAGGCACCATTACCACCTTTTGTGGATTCTGAGGTAAATAACCTTAATAATAATGATGATGAAGAAAATAATAATACAAACAACGAGTTAGATTTCATGGCCGATTTCGAAATGGATGAGGGCTTCTTTTCGGATCTTCTGAATATGGATATATCCGAACCGGCATCTTGTTTTGAAAACAAGGTCGTCACTACTAGTGAAGGTGGCGGTCATCAACATTTGTCTTCACCAGTGGTATCTAATGACGACACCCACTTGAATAATAATAACAACAATGTTTCTGAGGATTCCTTGCATGAAGCTGAGGATTTTCAGTCAATGTCAGCTTTAATGGAGAATGAATTTGATTGGCTTTAA 972 0.4198 MGRSPCCAKEGLNKGAWTAIEDKILTDYIKIYGEGKWRHLPKRAGLKRCGKSCRLRWLNYLRPDIKRGNITRDEEDLIIRLHNLLGNRWSLIAGRLPGRTDNEIKNYWNTNIGKKLQNNGNSKTKSLPTSSGSPPSRARQDKDMDPDLDPKAPQKTAGSCLVLTKATRCTKVIVNRENQPLKGVPCLIIHDEDEKVRCHRDEKIMEAPLPPFVDSEVNNLNNNDDEENNNTNNELDFMADFEMDEGFFSDLLNMDISEPASCFENKVVTTSEGGGHQHLSSPVVSNDDTHLNNNNNNVSEDSLHEAEDFQSMSALMENEFDWL 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju05g1925 323 MobiDBLite consensus disorder prediction 271 300 - -
Alju05g1925 323 MobiDBLite consensus disorder prediction 113 156 - -
Alju05g1925 323 Gene3D - 69 142 - -
Alju05g1925 323 CDD SANT 16 61 IPR001005 -
Alju05g1925 323 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Alju05g1925 323 SMART sant 13 63 IPR001005 -
Alju05g1925 323 SMART sant 66 114 IPR001005 -
Alju05g1925 323 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Alju05g1925 323 FunFam MYB-related transcription factor 13 66 - -
Alju05g1925 323 MobiDBLite consensus disorder prediction 271 301 - -
Alju05g1925 323 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Alju05g1925 323 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Alju05g1925 323 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
Alju05g1925 323 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Alju05g1925 323 MobiDBLite consensus disorder prediction 113 137 - -
Alju05g1925 323 CDD SANT 71 112 IPR001005 -
Alju05g1925 323 Gene3D - 14 66 - -
Alju05g1925 323 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Alju05g1925 323 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 252 - -
Alju05g1925 323 FunFam Transcription factor TT2 70 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju05g1925 Alju-ChrAlju05 51803619 51805632 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju05g1925 1 140 MYB Transcription Factor Family AT4G38620 67.606 1.24e-61 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Alju05g1925 Myb_DNA-binding 9e-13 CL0123