Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju05g1921 ATGCAAAGTAGGCCTTTTAATCAAGGCCATCAAGATCTAATCGCGGAGAGGAGGCTCAGTTTTCTTCGGATTTCACAGAAGCTCATCAACATGGCGACCCAAATGAGCAAAAAGCGAAAGTTTGTGGCCGATGGAGTGTTTTTTGCCGAGCTGAATGAGGTTTTGACTAGGGAACTTGCAGAGGATGGTTACTCTGGTGTTGAAGTTAGGGTTACCCCCATGCGTACTGAGATCATCATTAGGGCGACTCGCACTCAGAACGTTCTCGGTGAGAAGGGAAGAAGAATTAGGGAACTGACTTCCATTGTTCAGAAGCGTTTCAAGTTCCCTGAGAACAGCGTTGAGCTATATGCTGAGAAAGTCAACAACAGAGGGCTCTGTGCTATTGCACAGGCAGAGTCTCTGCGTTACAAGCTTCTTGGAGGTCTTGCTGTCAGAAGGGCTTGCTATGGTGTCCTTAGGTTTGTCATGGAAAGTGGTGCCAAAGGTTGTGAGGTTATTGTTAGTGGCAAGCTCAGGGCTCAGCGTGCCAAATCTATGAAATTCAAGGACGGATACATGATATCATCTGGTCAGCCCGTCAAAGAATATATCGACTCTGCTGTGAGGCACGTGCTTTTGAGACAGGGTGTTCTTGGTATCAAGGTGAAAATTATGCTTGATTGGGATCCTAAGGGCAAGCAAGGACCAACAAAGCCTATTCCGGATGTGGTCACAATCCATCCACCAAAGGAGGAGGAAGATTACATTGTCAGGCCCTTGCAAGCGCCCGCAGTTCCCACCAACATAGAGATTCCAGCTGTCTAG 807 0.4758 MQSRPFNQGHQDLIAERRLSFLRISQKLINMATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSIVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKEYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPTKPIPDVVTIHPPKEEEDYIVRPLQAPAVPTNIEIPAV 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju05g1921 268 Pfam Ribosomal protein S3, C-terminal domain 136 218 IPR001351 GO:0003735|GO:0006412
Alju05g1921 268 SUPERFAMILY Ribosomal protein S3 C-terminal domain 123 221 IPR036419 -
Alju05g1921 268 FunFam 40S ribosomal protein S3 123 257 - -
Alju05g1921 268 NCBIfam 30S ribosomal protein S3 38 240 IPR005703 GO:0003735|GO:0006412|GO:0015935
Alju05g1921 268 FunFam 40S ribosomal protein S3 31 122 - -
Alju05g1921 268 ProSiteProfiles Type-2 KH domain profile. 51 122 IPR004044 GO:0003723
Alju05g1921 268 ProSitePatterns Ribosomal protein S3 signature. 177 213 IPR018280 -
Alju05g1921 268 SUPERFAMILY Prokaryotic type KH domain (KH-domain type II) 40 129 IPR009019 GO:0003723
Alju05g1921 268 PANTHER 30S/40S RIBOSOMAL PROTEIN S3 36 228 - -
Alju05g1921 268 CDD KH-II_40S_S3 35 125 - -
Alju05g1921 268 Gene3D - 123 249 IPR036419 -
Alju05g1921 268 Pfam KH domain 50 123 IPR004044 GO:0003723
Alju05g1921 268 Gene3D - 28 121 IPR015946 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju05g1921 Alju-ChrAlju05 51722166 51724357 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju05g1921 31 268 Cytoplasmic Ribosomal Protein Gene Family AT5G35530 84.898 1.06e-150 419