Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju05g1899 ATGCTATTTTTTTTGCTTGATTGTATTTCTTCCCACATTTCTGGCATTCATTTATCCAGTTGCCTTGCTTCATCTCTTTATGATGACACTTGAGACGTCCCCTCAGTACAGTCACAGACCAAGGCTAAAAAAGAGAAGAAGCTGTGTCGTTTTGATACACCCAGATGATTAGTGCAGACTCAAGCTCATTCAGTTAGTTTTTCTAATAGTTACTGCAACGGCAATTTTCTAGATTTTGGCCTATGTTCTACTCATTCAACATCTCCTGATTCTCTTGGATCCTCATCATGGAAAACTTTATCTGGATTTCACGGACAAGAAGAACCACCTATATCCCAAAGCTTGAGCTTAAAAATGGGAGATCTCCCACAACAATGTCTTAATACTAAGCTGTTTAGTTTTCCAGTTCAAGAACATTACTCATCTTCAACCCAACCAACTGATGAATCTGATCCTAAAGGTGTTTCGGCTAACTCAAGTCCTTCGGATGGAAAGTGCTTCGGAGATCTCATCAAGTCGCCTGTAGGGAGGCAGGATTTTGCCTTTCCTTCTTCACTTCTGGATCATAACAAATCAATTATTCATCATTCTCAACTAATGGGAATGGCTTCTCCACTTCGAGTTCCACTTCCACTCGACTTCACGGAAGAACCCATATTTGTGAATGCAAAACAATATCATGCAATTCTGAGGCGAAGACAGTGTCGATCAAAACTCAAATCACAGAACAAGCTCAACAAAACCCGGAAACCTTATATCCACAAGTCTCGTCATCTACATGCACTGAAGAGAGCTAGAGGTTCTGGTGGACGCTTTCTTAACACCAAAAAGCTCCAAGAATCATCATCATCAGAATTACCTCCAGCATTGAATAATCTGACTGTTGCTGCACCAGAATCTGAATTTCTTGGGTTAGAAAATTGCAGAGACGGTTCAGATGTGACGAGCGCTTCTAACAGCGACAACATCTTCCAGCAGCAACATGAATCGAATTCAAGGTTGTTTGGAAGATATCATCCTGACATTGGAAGCAATATGCAAAGTTTCTCAGTTGATATGAGTGGTGGTGATGAGAATAAGCATAGTGTATCTGTCTTCATGTGA 1104 0.4067 MLFFLLDCISSHISGIHLSSCLASSLYDDTXDVPSVQSQTKAKKEKKLCRFDTPRXLVQTQAHSVSFSNSYCNGNFLDFGLCSTHSTSPDSLGSSSWKTLSGFHGQEEPPISQSLSLKMGDLPQQCLNTKLFSFPVQEHYSSSTQPTDESDPKGVSANSSPSDGKCFGDLIKSPVGRQDFAFPSSLLDHNKSIIHHSQLMGMASPLRVPLPLDFTEEPIFVNAKQYHAILRRRQCRSKLKSQNKLNKTRKPYIHKSRHLHALKRARGSGGRFLNTKKLQESSSSELPPALNNLTVAAPESEFLGLENCRDGSDVTSASNSDNIFQQQHESNSRLFGRYHPDIGSNMQSFSVDMSGGDENKHSVSVFM 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju05g1899 367 ProSiteProfiles NF-YA/HAP2 family profile. 215 275 IPR001289 GO:0003700|GO:0006355
Alju05g1899 367 Gene3D - 215 276 - -
Alju05g1899 367 PRINTS CCAAT-binding transcription factor subunit B signature 249 272 IPR001289 GO:0003700|GO:0006355
Alju05g1899 367 PRINTS CCAAT-binding transcription factor subunit B signature 218 240 IPR001289 GO:0003700|GO:0006355
Alju05g1899 367 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 137 333 IPR001289 GO:0003700|GO:0006355
Alju05g1899 367 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 217 272 IPR001289 GO:0003700|GO:0006355
Alju05g1899 367 SMART cbf3 214 275 IPR001289 GO:0003700|GO:0006355
Alju05g1899 367 MobiDBLite consensus disorder prediction 138 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju05g1899 Alju-ChrAlju05 51356985 51364500 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju05g1899 77 367 CCAAT-HAP2 Transcription Factor Family AT1G17590 37.538 4.19e-40 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Alju05g1899 CBFB_NFYA 1.2e-24 No_clan