Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju05g1898 ATGGACCCGCGAGCAAATTGTAATCCTCGCACTGTTGAAGAGGTTTTCAGGGATTTCAAGGGCCGAAGAGCTGCAATGATTAAAGCCCTCACATCGGAGGTTGAAGATTTTTACAACCAATGTGACCCTGATAAGGAGAATTTGTGCTTGTATGGACTTCCTAGTGAGCAGTGGGAAGTGAACCTACCTGCTGAAGAAGTTCCTCCAGAACTTCCTGAGCCTGTTTTGGGAATTAATTTTGCCAGGGATGGCATGCAAGAAAAAGATTGGTTATCTCTAGTTGCAGTCCACAGTGATACATGGTTACTTTCCGTGGCCTTCTATTTTGGAGCCAGATTTGGGTTTGATAGAGCTGACAGGAGACGGCTTTTCAATATGATCAATGAACTGCCAACAATTTTTGAAGTTGTTACTGGTACATCAAAGAAAGAAGGGAAGGAGAAGCCTTCAAATCAAGGCAGCAACAAATCTAAGTCTGGTTCTAAGATGAGAGCTTCAGAAGGTCAGGGTAGACAATCGAAGTTGCAGCATCCAAAAGATGAGGATGAAGTTCCAGAGGAGGAAGATGAAGATGATGAACATGGGGATACCGCTTGTGGGGCATGCGGCGAGAGTAACGGTGCTGATGAGTTCTGGATTTGCTGTGACATCTGCGATAAGTGGTTCCATGGCAAATGTGTGAAGATTACTTCTGCAAGGGCAGAGCATATCAAGCAATACAAATGCCCATCATGCAGTAACAAGAGAGCTCGTTGCTGA 759 0.448 MDPRANCNPRTVEEVFRDFKGRRAAMIKALTSEVEDFYNQCDPDKENLCLYGLPSEQWEVNLPAEEVPPELPEPVLGINFARDGMQEKDWLSLVAVHSDTWLLSVAFYFGARFGFDRADRRRLFNMINELPTIFEVVTGTSKKEGKEKPSNQGSNKSKSGSKMRASEGQGRQSKLQHPKDEDEVPEEEDEDDEHGDTACGACGESNGADEFWICCDICDKWFHGKCVKITSARAEHIKQYKCPSCSNKRARC 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju05g1898 252 ProSiteProfiles Zinc finger PHD-type profile. 196 248 IPR019787 -
Alju05g1898 252 MobiDBLite consensus disorder prediction 152 172 - -
Alju05g1898 252 PANTHER CPG BINDING PROTEIN 8 251 IPR045104 GO:0006355|GO:0042393
Alju05g1898 252 Pfam Alfin 11 139 IPR021998 GO:0006355|GO:0042393
Alju05g1898 252 MobiDBLite consensus disorder prediction 141 196 - -
Alju05g1898 252 FunFam PHD finger alfin-like protein 191 247 - -
Alju05g1898 252 Pfam PHD-finger 199 248 IPR019787 -
Alju05g1898 252 ProSitePatterns Zinc finger PHD-type signature. 199 245 IPR019786 -
Alju05g1898 252 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 188 247 IPR013083 -
Alju05g1898 252 SMART PHD_3 198 246 IPR001965 -
Alju05g1898 252 CDD PHD_AL_plant 199 248 IPR044104 -
Alju05g1898 252 SUPERFAMILY FYVE/PHD zinc finger 187 249 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju05g1898 Alju-ChrAlju05 51349237 51352916 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju05g1898 8 251 Alfin-like Transcription Factor Family AT3G42790 73.770 3.61e-122 346
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Alju05g1898 Alfin 1.5e-67 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju11g0525 11 5654692 5658497 Alju05g1898 05 51349237 51352916 CCT
Alju05g1898 05 51349237 51352916 Alju11g0525 11 5654692 5658497 ECH
Alju05g1898 05 51349237 51352916 Alju05g1898 05 51349237 51352916 ECH