Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju05g1871 ATGTTTAACTCAGGGCTGACCAACTTGGTGCCAGATATTCTGGGCGGCCACAAGCAGGGCAAGATCAAAGGCACGGTGGTGCTCATGACCAAGAAGGTTCTTGACTTCAACAACCTCAACCTCAACGCCGGCATTAACCTCGGCCTCGGCGTCGCCGGCTCCGTCTTGGACGGCCTCCGCCAGTTCTTGGGCGGCGCTGTTTCCTTTCAGCTCATCAGTGGCCAGAACGCTGATCCTGGAAACGGGTTGGGAAAACTGGGAAAGGCCGCATCACTGGAAGGGTTTGTGACCACATTGCCAACACTGTTAGAAGGGCAGAGCGCCTTCAGTGTTCACTTCGACTACACTCATGACTTTGGAGTTCCTGGAGCCTTCGTCATCAGAAACAATCTTCTCGCCGAATTCTATCTCGTGAGCTTGACGCTTGATGATATCCCAAATCATGGATCCGTCCATTTTGTTTGCAACTCCTGGATCTACCCTGCCAGCAGATACAGGAGCGATCGCATCTTCTTCGCCAACAAGGCGTATGTTCCGAGCAAAACACCATCGGCTTTGGCCAAATACAGAGAACAAGAGCTTATTACTTTAAGAGGAGATGGATTCGCTGAGCTCCAGGAACACGATAGAGTCTATGATTATGCTACCTACAATGATTTGGGCTGGCCAGATCTCAGAAAGAGCCTTGCCCGTCCTACTGTTGGAGGCTCTTCCGATTATCCTTATCCTCGTCGAGGAAGAACTAGCAGGCCGCCCTCTAAATCAGATCCCAACACTGAGAGTAGGCTTCTTCCTGCAGTTCAGAACTTCGATATCTATGTTCCAAGGGATGAACGATTTGGTCACGTTAAGTTGTCGGACTTTCTGACCTATTTCCTGAAATCTATTTCTCATGATTTGAGGCCATTGTTAGAATCGGCATTCAATTTCATGTCCAATGAGTTCAACAGCTTTGATGAAGTCCGCGACCTCTATGAAGGTGGATTTCAACTGCCTCAAGATGTACTTAAAAATATCAGCGAAAGAATGCCTATACCCATGCTCAAGGAACTCTTCCGAACTGATGGTGAACAAGCTCTCAGATATCCTACGCCTAAAGTTATTAAAGAAAACAAATCTGGATGGATGACTGATGAAGAATTTGCAAGAGAAACGTTGGCTGGTGTGAATCCAGGTGTAATCCGGGCTCTCCAAGAGTTTCCCCCAAAGAGCACGCTGGATATTAGGGTCTACGGTGATCAAACGAGCAAGATAACCAAAGAGCAGCTGGAGCAAACTATGGGTGGAGTAACAGTGGATGAGGCACTCCAAGGCAGGAGATTGTTCATATTAGATCACCATGATGCATTCATGCCATATCTGAGGAAGATAAATGAAACTTCAAAAAAGGCTTATGCCACCAGGACGATTCTTTTCTTGAAGGAGGATGGGACTTTGAAGCCATTGGCTATTGAATTAAGTTTACCCCATCCTGATGGAGATGAATACGGCTTTATAAGTAGGGTCGTCTTGCCTGCAGATCAAGGGGTTGAGGGTACCATTTGGCTATTAGCCAAAGCTTATGTGACTGTAAACGACTCTGGTTATCATCAACTTGTTAGCCACTGGCTACAAACTCATGCAGTCATTGAGCCATTTATCATAGCAACTAACAGGCAGCTCAGTGTTCTTCATCCTATTCATAAACTTCTCTATCCTCATTTCCGTGACACGATGAATATAAATGCTCTTGCTCGACAAGCCTTGATCAATGCAGATGGAATTATAGAGTTGTCATTCTTGCCTGGACAATACTCGATAGAGATGTCTTCCAAGGTTTACAAGAACTGGGTTTTCCCTGATCAAGCCCTGCCCATAGATCTTATCAAAAGAGGAATGGCTGTCGAGGATTCAGAATGTCCTTATGGGCTTCGCCTGGTGATAGAGGACTATCCTTTTGCTGTGGATGGACTTGAGATTTGGGCTGCTATTAATACATGGGTTCATGACTATGTTCACTGCTACTATGACAAGAATGAAGATATTCAACAAGACTCTGAACTACAAGCTTGGTGGAAAGAAGTCGTAGAAGTTGGTCACGGAGATTTAAAAGATCAGCCTTGGTGGTTTAAAATGCAAACTCGTGCTGAGCTTATTGAAGCATGCACTATCATCATATGGACTTCTTCAGCCCTCCATGCAGCTGTCAATTTTGGACAATATCCTTATGGAGGTTATATTGTAAACCGTCCAACTCTTAGCAGGAGGTTGCTTCCCGAAGAAGGAACTCCAGAATATGAAGAACTAAGGAAGAACCCAGAGAAAGCTTTCTTGAAGACAATAACACCAAAGTTGCAGACCCTTGTTGACCTCTCAGTTATAGAAATCTTATCAAGGCACGCTTCTGATGAGGTCTATCTCGGGACAAGGGACAATCCTAACTGGACTTCTGATGTGAAGCCATTGGAAGCCTTCAAGAAGTTCGGGAAGAAGTTGGAAGAGATTGAGAAAAAGCTGATAGAAAGGAACAAAACTGAGACACTAAGAAACAGGATTGGGCCAGTCAACATGCATTACACTCTTCTGTATCCTACAAGTGAGGAAGGACTCACCTGCAGAGGAATTCCAAATAGCATCTCTATCTGA 2625 0.4522 MFNSGLTNLVPDILGGHKQGKIKGTVVLMTKKVLDFNNLNLNAGINLGLGVAGSVLDGLRQFLGGAVSFQLISGQNADPGNGLGKLGKAASLEGFVTTLPTLLEGQSAFSVHFDYTHDFGVPGAFVIRNNLLAEFYLVSLTLDDIPNHGSVHFVCNSWIYPASRYRSDRIFFANKAYVPSKTPSALAKYREQELITLRGDGFAELQEHDRVYDYATYNDLGWPDLRKSLARPTVGGSSDYPYPRRGRTSRPPSKSDPNTESRLLPAVQNFDIYVPRDERFGHVKLSDFLTYFLKSISHDLRPLLESAFNFMSNEFNSFDEVRDLYEGGFQLPQDVLKNISERMPIPMLKELFRTDGEQALRYPTPKVIKENKSGWMTDEEFARETLAGVNPGVIRALQEFPPKSTLDIRVYGDQTSKITKEQLEQTMGGVTVDEALQGRRLFILDHHDAFMPYLRKINETSKKAYATRTILFLKEDGTLKPLAIELSLPHPDGDEYGFISRVVLPADQGVEGTIWLLAKAYVTVNDSGYHQLVSHWLQTHAVIEPFIIATNRQLSVLHPIHKLLYPHFRDTMNINALARQALINADGIIELSFLPGQYSIEMSSKVYKNWVFPDQALPIDLIKRGMAVEDSECPYGLRLVIEDYPFAVDGLEIWAAINTWVHDYVHCYYDKNEDIQQDSELQAWWKEVVEVGHGDLKDQPWWFKMQTRAELIEACTIIIWTSSALHAAVNFGQYPYGGYIVNRPTLSRRLLPEEGTPEYEELRKNPEKAFLKTITPKLQTLVDLSVIEILSRHASDEVYLGTRDNPNWTSDVKPLEAFKKFGKKLEEIEKKLIERNKTETLRNRIGPVNMHYTLLYPTSEEGLTCRGIPNSISI 874
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju05g1871 874 CDD PLAT_LH2 21 174 IPR042057 -
Alju05g1871 874 SUPERFAMILY Lipoxigenase 179 874 IPR036226 -
Alju05g1871 874 SMART LH2_4 20 174 IPR001024 GO:0005515
Alju05g1871 874 Gene3D PLAT/LH2 domain 15 177 - -
Alju05g1871 874 Gene3D - 178 283 - -
Alju05g1871 874 PRINTS Plant lipoxygenase signature 312 333 IPR001246 GO:0016491
Alju05g1871 874 PRINTS Plant lipoxygenase signature 399 418 IPR001246 GO:0016491
Alju05g1871 874 PRINTS Plant lipoxygenase signature 465 489 IPR001246 GO:0016491
Alju05g1871 874 PRINTS Plant lipoxygenase signature 787 801 IPR001246 GO:0016491
Alju05g1871 874 PRINTS Plant lipoxygenase signature 169 190 IPR001246 GO:0016491
Alju05g1871 874 PRINTS Plant lipoxygenase signature 360 376 IPR001246 GO:0016491
Alju05g1871 874 PRINTS Plant lipoxygenase signature 143 161 IPR001246 GO:0016491
Alju05g1871 874 PRINTS Plant lipoxygenase signature 208 224 IPR001246 GO:0016491
Alju05g1871 874 PRINTS Plant lipoxygenase signature 241 260 IPR001246 GO:0016491
Alju05g1871 874 Gene3D - 374 507 - -
Alju05g1871 874 Gene3D - 508 873 - -
Alju05g1871 874 MobiDBLite consensus disorder prediction 233 261 - -
Alju05g1871 874 ProSiteProfiles PLAT domain profile. 39 173 IPR001024 GO:0005515
Alju05g1871 874 PANTHER LIPOXYGENASE 20 874 IPR000907 GO:0016702|GO:0034440|GO:0046872
Alju05g1871 874 ProSitePatterns Lipoxygenases iron-binding region signature 2. 557 567 IPR020834 GO:0016702|GO:0046872
Alju05g1871 874 FunFam Lipoxygenase 374 507 - -
Alju05g1871 874 Pfam Lipoxygenase 186 857 IPR013819 GO:0016702|GO:0046872
Alju05g1871 874 FunFam Lipoxygenase 509 873 - -
Alju05g1871 874 Pfam PLAT/LH2 domain 81 172 IPR001024 GO:0005515
Alju05g1871 874 Gene3D - 284 373 IPR027433 -
Alju05g1871 874 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 176 874 IPR013819 GO:0016702|GO:0046872
Alju05g1871 874 PRINTS Lipoxygenase signature 530 547 IPR013819 GO:0016702|GO:0046872
Alju05g1871 874 PRINTS Lipoxygenase signature 512 529 IPR013819 GO:0016702|GO:0046872
Alju05g1871 874 PRINTS Lipoxygenase signature 550 570 IPR013819 GO:0016702|GO:0046872
Alju05g1871 874 ProSitePatterns Lipoxygenases iron-binding region signature 1. 530 544 IPR020833 GO:0016702|GO:0046872
Alju05g1871 874 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 21 177 IPR036392 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju05g1871 Alju-ChrAlju05 50766058 50771157 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju05g1871 21 874 Acyl Lipid Metabolism Gene Families AT1G55020 61.727 0.0 1104