Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju05g1863 ATGGGAAATCAAAAGCACAAGTGGACAGCCGATGAAGAAGAAGCTTTGCTCGCCGGCATTAAGAAGCATGGCCCGGGCAAGTGGAAGAATATCCTCAAAGATCCCGAATTCGCCCCCTTCCTCACTCACCGTTCCAATATCGATCTTAAGGATAAATGGAGAAATTTAAGTGTTAGTACTGCAGCTCAAGGAGGATCTAAAGAAAAAGCTAAGAATATAACGATTAAGACTACGGAACCTGCTACACCTGCGAGCACGCAAAATGCTTCTGTTGCTACTCCACTTCGTCATTGTGCATCTTCTGATGCCATCACAGATGATTCTTCTCACAATGTACAGGAGGTCAAACAAGCTCCACAGTACAATGCAATGATTTTTGAAGCCCTATCAACGTTGAGAGATTCCAATGGATCTGACCTAAATGCTATTGTTAGCTTCATTGAGCAAAAGCATGATGTTCCTCAAAATTACAGACGAGCAGTAGGTGCAAGGTTGAGAAAGCTTGTTGATCAAGGAAAACTTGAAAAGGTACAAAATCGTTACAGGATAAAGAGAACCACGACACCTGTGGAGACAAAACCACCTGCACCAAAACAAATCGATTCCAGGCCACGCCAATCACCGGCCTCAGGCATTACGGTATCATCTCATGAGTCGGTAATGGATGCTGTGGAGATTGCAGCATACAGAGTTGCTGAAGCAGAGCACAAATCATATTGGGCTGCTGAAGCAACTAAGGAGGCAGAAAAATTATCAAAGTTGACCGAAGATGCTGATGCAATGTTACAGCTAGCCAAAGAGATTTATGAGCAATGTACTTCTGATAAATTGACTCTATCTTCTCAATGA 849 0.4311 MGNQKHKWTADEEEALLAGIKKHGPGKWKNILKDPEFAPFLTHRSNIDLKDKWRNLSVSTAAQGGSKEKAKNITIKTTEPATPASTQNASVATPLRHCASSDAITDDSSHNVQEVKQAPQYNAMIFEALSTLRDSNGSDLNAIVSFIEQKHDVPQNYRRAVGARLRKLVDQGKLEKVQNRYRIKRTTTPVETKPPAPKQIDSRPRQSPASGITVSSHESVMDAVEIAAYRVAEAEHKSYWAAEATKEAEKLSKLTEDADAMLQLAKEIYEQCTSDKLTLSSQ 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju05g1863 282 PANTHER SINGLE MYB HISTONE 4 1 276 IPR044597 GO:0003691
Alju05g1863 282 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Alju05g1863 282 FunFam Telomere repeat-binding factor 1 2 58 - -
Alju05g1863 282 SUPERFAMILY "Winged helix" DNA-binding domain 118 185 IPR036390 -
Alju05g1863 282 SUPERFAMILY Homeodomain-like 2 58 IPR009057 -
Alju05g1863 282 Gene3D - 8 88 - -
Alju05g1863 282 Gene3D - 113 199 IPR036388 -
Alju05g1863 282 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 117 185 IPR005818 GO:0000786|GO:0003677|GO:0006334
Alju05g1863 282 MobiDBLite consensus disorder prediction 185 216 - -
Alju05g1863 282 SMART h15plus2 115 180 IPR005818 GO:0000786|GO:0003677|GO:0006334
Alju05g1863 282 Pfam Myb-like DNA-binding domain 6 56 IPR001005 -
Alju05g1863 282 SMART sant 4 59 IPR001005 -
Alju05g1863 282 FunFam Telomere repeat-binding factor 1 8 89 - -
Alju05g1863 282 ProSiteProfiles Myb-like domain profile. 1 57 IPR001005 -
Alju05g1863 282 Pfam linker histone H1 and H5 family 119 178 IPR005818 GO:0000786|GO:0003677|GO:0006334
Alju05g1863 282 CDD SANT_TRF 6 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju05g1863 Alju-ChrAlju05 50619601 50622963 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju05g1863 1 277 Single Myb Histone (SMH) Gene Family AT1G17520 48.097 6.00e-77 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Alju05g1863 Linker_histone 2e-10 CL0123