Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju05g1860 ATGGAGCCTCGAGTTGGAAACAAGTTCCGTCTCGGCCGGAAGATTGGTAGCGGATCGTTTGGAGAGATCTACCTCGGTACTAATATTCAGACAAATGAAGAGGTTGCAATTAAGCTTGAAAATGCCAAGACCAAGCACCCCCAACTTTTGTATGAATCGAAGCTGTATAAAATACTACAAGGAGGAACTGGAATCCCAAACTTAAAATGGTTTGGAGTTGAAGGAGACTACAATGTGCTTGTAATGGATTTACTGGGGCCTAGTCTTGAAGATTTATTCAATTTTTGTAGTAGGAAGTTGTCCCTCAAAACTGTTCTGATGCTTGCTGATCAGATGATAAATCGAGTTGAGTTTGTCCATTCTAAATCTTTTTTACATCGTGACATCAAGCCGGACAACTTCCTCATGGGTTTAGGGAGGCGTGCTAATCAAGTGTATGTCATTGACTTCGGTCTTGCTAAGAAATACAGAGACACTTCTACTCATCAGCATATTCCTTACAGAGAGAATAAGAATTTAACAGGAACTGCAAGATATGCTAGCATGAATACTCATCTTGGAATTGAGCAAAGCCGAAGAGATGACTTAGAGTCACTTGGATACGTTCTTGTGTATTTTTTGAGGGGAAGCCTTCCTTGGCAGGGACTGAAAGCTGGTACTAAGAAGCAAAAGTATGAAAAGATCAGTGAGAAGAAAGTGTCTACTTCTATTGAGGCTCTCTGCCGTGGTTATCCATCGGAATTTGCATCGTACTTTCACTATTGTCGGTCACTTCGGTTTGATGATAAACCTGATTATGCTTATCTAAAGAGGCTTTTCCGTGACCTTTTTATTCGTGAAGGATTTCAGTTTGATTATGTCTTCGACTGGACCATTTTGAAATATCAGCAATCTCAAATTACCACTCCTCCTTCACGTGGTATTGGTCCTGGTGTTGGGCCAAGTTCTGGCATGCCACCAGCAGTTGCAAATGCTGATAGGCATTTAGGTGGAGAAGATGGTAGGCACACTGGTTGGACTTCATCAGATCCTACTCGGAGGAGACACTCTGGACCTATTGCAAATGATGGCATTTTACCAAGACAAAAGGCCCCAGTTGCAAATGACTTGACTGGTTCTAAAGATGTTACGTTTTCAAGCTCCAATCTCTTCCGGTCAAGTGGATCACAAAGGCGAGGGGCTGTTTCTGGCAGTCGTGATGCAATTGTTGTTGGTGAGACTGAACCCTCTCGCCCTCTTGCTGTGGATACAAGTCCTGGAGCACTTCGTAAAGTCTCTGGAGCTCAAAGAGGTTCACCTATTATATCATCGGAACAAAACCGAACTTCATCTGGGAGAAACCTGCCAAATGTAAAGAATTTTGAGTCAACACTCAGGGGTATCGAGGACCTGCATTTTAATGATGAGAGGGTGCAGTATTAG 1422 0.4283 MEPRVGNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENAKTKHPQLLYESKLYKILQGGTGIPNLKWFGVEGDYNVLVMDLLGPSLEDLFNFCSRKLSLKTVLMLADQMINRVEFVHSKSFLHRDIKPDNFLMGLGRRANQVYVIDFGLAKKYRDTSTHQHIPYRENKNLTGTARYASMNTHLGIEQSRRDDLESLGYVLVYFLRGSLPWQGLKAGTKKQKYEKISEKKVSTSIEALCRGYPSEFASYFHYCRSLRFDDKPDYAYLKRLFRDLFIREGFQFDYVFDWTILKYQQSQITTPPSRGIGPGVGPSSGMPPAVANADRHLGGEDGRHTGWTSSDPTRRRHSGPIANDGILPRQKAPVANDLTGSKDVTFSSSNLFRSSGSQRRGAVSGSRDAIVVGETEPSRPLAVDTSPGALRKVSGAQRGSPIISSEQNRTSSGRNLPNVKNFESTLRGIEDLHFNDERVQY 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju05g1860 473 FunFam Casein kinase I isoform delta-like 1 308 - -
Alju05g1860 473 CDD STKc_CK1_delta_epsilon 8 282 - -
Alju05g1860 473 PANTHER CASEIN KINASE-RELATED 9 381 - -
Alju05g1860 473 ProSiteProfiles Protein kinase domain profile. 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Alju05g1860 473 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Alju05g1860 473 FunFam Putative Casein kinase I 1 85 - -
Alju05g1860 473 Pfam Protein kinase domain 10 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Alju05g1860 473 MobiDBLite consensus disorder prediction 423 451 - -
Alju05g1860 473 SUPERFAMILY Protein kinase-like (PK-like) 5 290 IPR011009 -
Alju05g1860 473 Gene3D Transferase(Phosphotransferase) domain 1 1 306 - -
Alju05g1860 473 SMART serkin_6 9 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Alju05g1860 473 MobiDBLite consensus disorder prediction 328 343 - -
Alju05g1860 473 MobiDBLite consensus disorder prediction 430 451 - -
Alju05g1860 473 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Alju05g1860 473 MobiDBLite consensus disorder prediction 301 373 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju05g1860 Alju-ChrAlju05 50593342 50598162 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju05g1860 7 223 EF-hand Containing Proteins AT2G17890 26.222 2.80e-13 70.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Alju05g1860 Pkinase 2.5e-27 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju11g0536 11 5790875 5795241 Alju05g1860 05 50593342 50598162 CCT