Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju05g1814 ATGTTTGAGAAAAAGATAGATGCTGTATTGGATCCATGTTCCACCTTCATCAGCAGAAATATGTCTAATTTGATGACCTCTTCTTCATCAGCTGAAGCCAAATTTTCAATTTATCCTCCTCCTCATTATCAACAACAATACTTGTCTTCTTCTTCTTCTTCGTCTCAATCTCATCAGCCAGTGAAGAAAAAGAGAAACCTCCCTGGCAACCCAGACCCAGAAGCAGAAGTGATTGCCTTGTCTCCAAACACTCTTTTAGCAACAAACAGGTTCATATGCGAGATCTGCAACAAAGGGTTTCAGAGGGATCAGAATCTGCAGCTACATAGAAGAGGGCACAATCTGCCATGGAAGCTGAAGAAGAGAACGAGCAAAGAGATAATAAGGAAGAAGGTGTATGTGTGTCCAGAACCAACGTGCGTTCACCATGACCCTTTAAGAGCACTTGGAGACCTAACAGGGATCAAGAAGCACTTTTGCAGAAAGCACGGTGAGAAGAAGTGGAAATGTGATAAGTGTTCTAAGAGGTACGCAGTTCAATCTGATTGGAAGGCTCACTCCAAAACCTGTGGCACAAGAGAGTACAAATGTGACTGTGGCACCCTCTTCTCTAGGAGGGACAGTTTCATAACTCACAGAGCATTCTGTGATGCATTAGCAGAAGAAAGTGCAAGATCATCATCAGCAGGAAACCACCAAGTTCTTCTTGTTCCCTCATCACAGCCACACTTAAACACTTCTTTTACTAACAATAATCTCCAAACCCAGTTCTTGAAAAACGAGATCACTCTCACTTCTACCACTTCTTCTAGTCTCATCAGGCAAGGAATTCAGATTCCCTCTTGGCTTGGTGGGCCCCCCACTAATTCTCAGCTTCATCATCTTCTTAGCGATGAAAGTCCAAACCCTAACCCTACTAGCCTGGGCCCCACCACCACCACCACCACTGGTTTTCTTTCAGGTCCAGCTCCTTATTCTTCCCACATGTCAGCCACAGCCTTGCTTCAGAAAGCGGCTCAGATCGGTTCAACCCTCAGCAAAACCGGTTCGCCCATCCTCAGGACCCACACCAACCCTACCCATCACGTGTCTGCTGCTTTGAATCCTCAAGGTCACGTGACCACCACGACTAGCCATGGCTTCTTGTCTCCTTTCTCTTCTTCTACTTCTGATTTCGAGGAGGCTTTGATTATTAATGGTGGGATTTTGAATAATCCCTTCAAGAAAGATGCCGACGACTTGCACCGCCGCCACGGTGATCTTTTCAGAGCAACCGACTCTGGCGGTGGCGGGAGAACAGGTGGGAACGTGGAGGGTTTGACGAGAGATTTCTTGGGTCTTAAACCTCTTTCCCATAATGAGATTCTCACCATGGCAGGTTTTGGAAACTGCATGAGCTCCTCTACTTCCTCCTCCCACCATGATCAACCAATTCGTCAATTCCAATGGCAAGCTTAA 1458 0.4616 MFEKKIDAVLDPCSTFISRNMSNLMTSSSSAEAKFSIYPPPHYQQQYLSSSSSSSQSHQPVKKKRNLPGNPDPEAEVIALSPNTLLATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKKRTSKEIIRKKVYVCPEPTCVHHDPLRALGDLTGIKKHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTREYKCDCGTLFSRRDSFITHRAFCDALAEESARSSSAGNHQVLLVPSSQPHLNTSFTNNNLQTQFLKNEITLTSTTSSSLIRQGIQIPSWLGGPPTNSQLHHLLSDESPNPNPTSLGPTTTTTTGFLSGPAPYSSHMSATALLQKAAQIGSTLSKTGSPILRTHTNPTHHVSAALNPQGHVTTTTSHGFLSPFSSSTSDFEEALIINGGILNNPFKKDADDLHRRHGDLFRATDSGGGGRTGGNVEGLTRDFLGLKPLSHNEILTMAGFGNCMSSSTSSSHHDQPIRQFQWQA 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju05g1814 485 MobiDBLite consensus disorder prediction 288 313 - -
Alju05g1814 485 FunFam protein indeterminate-domain 12-like 70 139 - -
Alju05g1814 485 ProSiteProfiles Zinc finger C2H2 type domain profile. 91 113 IPR013087 -
Alju05g1814 485 SUPERFAMILY beta-beta-alpha zinc fingers 90 188 IPR036236 -
Alju05g1814 485 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 36 466 IPR031140 -
Alju05g1814 485 FunFam protein indeterminate-domain 5, chloroplastic-like 146 225 - -
Alju05g1814 485 Pfam Zinc-finger double-stranded RNA-binding 91 113 IPR022755 -
Alju05g1814 485 Gene3D Classic Zinc Finger 148 226 - -
Alju05g1814 485 Gene3D Classic Zinc Finger 70 137 - -
Alju05g1814 485 MobiDBLite consensus disorder prediction 44 75 - -
Alju05g1814 485 SMART c2h2final6 133 163 IPR013087 -
Alju05g1814 485 SMART c2h2final6 91 113 IPR013087 -
Alju05g1814 485 SMART c2h2final6 168 188 IPR013087 -
Alju05g1814 485 ProSitePatterns Zinc finger C2H2 type domain signature. 93 113 IPR013087 -
Alju05g1814 485 MobiDBLite consensus disorder prediction 44 63 - -
Alju05g1814 485 MobiDBLite consensus disorder prediction 466 485 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju05g1814 Alju-ChrAlju05 49603710 49606738 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju05g1814 17 470 IDZ Gene Family AT1G55110 48.643 3.03e-125 371
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Alju05g1814 zf-C2H2_jaz 7e-05 CL0361